Best TWAS P=1.08e-10 · Best GWAS P=3.39e-08 conditioned to 0.148
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | NNT | 0.15 | 0.03 | enet | 21 | 0.07 | 3.3e-06 | -3.4 | -5.8 | 9.0e-09 | 0.39 | 0.38 | 0.54 | FALSE |
2 | GTEx | Adipose Subcutaneous | CCDC152 | 0.09 | 0.04 | lasso | 4 | 0.02 | 6.4e-03 | -5.1 | -5.1 | 3.1e-07 | 0.11 | 0.03 | 0.97 | TRUE |
3 | GTEx | Adrenal Gland | NNT | 0.17 | 0.15 | lasso | 4 | 0.07 | 1.3e-03 | 4.9 | -5.7 | 1.2e-08 | 0.56 | 0.06 | 0.91 | FALSE |
4 | GTEx | Brain Caudate basal ganglia | C5orf34 | 0.14 | -0.01 | enet | 14 | 0.00 | 3.3e-01 | -5.0 | -6.5 | 1.1e-10 | 0.59 | 0.05 | 0.63 | TRUE |
5 | GTEx | Cells Transformed fibroblasts | NNT-AS1 | 0.08 | 0.04 | lasso | 5 | 0.05 | 7.8e-05 | -4.9 | 5.1 | 2.8e-07 | -0.52 | 0.07 | 0.91 | FALSE |
6 | GTEx | Esophagus Mucosa | NNT | 0.31 | 0.24 | lasso | 8 | 0.26 | 1.4e-17 | -4.7 | -6.0 | 1.9e-09 | 0.54 | 0.16 | 0.83 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | NNT | 0.05 | 0.04 | enet | 11 | 0.04 | 4.3e-04 | -4.9 | -5.8 | 6.1e-09 | 0.65 | 0.05 | 0.91 | FALSE |
8 | GTEx | Small Intestine Terminal Ileum | NNT | 0.19 | 0.05 | enet | 31 | 0.10 | 3.8e-03 | -4.9 | -5.6 | 2.5e-08 | 0.53 | 0.06 | 0.64 | FALSE |
9 | GTEx | Thyroid | C5orf34 | 0.08 | 0.08 | lasso | 3 | 0.06 | 1.4e-05 | -4.6 | -5.5 | 4.3e-08 | 0.63 | 0.11 | 0.84 | FALSE |
10 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C5orf34 | 0.04 | 0.01 | enet | 4 | 0.03 | 1.5e-03 | -4.9 | -5.9 | 3.3e-09 | 0.49 | 0.01 | 0.76 | FALSE |
11 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C5orf34 | 0.11 | 0.12 | enet | 13 | 0.11 | 2.9e-12 | -4.9 | -5.7 | 1.3e-08 | 0.54 | 0.01 | 0.98 | FALSE |
12 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NNT | 0.04 | 0.01 | enet | 9 | 0.02 | 3.4e-03 | -3.9 | -5.6 | 2.7e-08 | 0.52 | 0.01 | 0.72 | FALSE |
13 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C5orf34 | 0.05 | 0.06 | blup | 39 | 0.05 | 3.2e-06 | -4.9 | -6.1 | 1.4e-09 | 0.58 | 0.01 | 0.98 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NNT | 0.07 | 0.01 | blup | 49 | 0.05 | 2.1e-06 | -4.7 | -5.3 | 9.6e-08 | 0.39 | 0.01 | 0.96 | FALSE |
15 | The Cancer Genome Atlas | Lung Adenocarcinoma | C5orf34 | 0.04 | 0.03 | blup | 39 | 0.03 | 1.5e-04 | -4.9 | -5.3 | 1.2e-07 | 0.54 | 0.01 | 0.98 | FALSE |
16 | The Cancer Genome Atlas | Lung Adenocarcinoma | NNT | 0.06 | 0.01 | enet | 7 | 0.02 | 9.0e-04 | -4.9 | -5.5 | 4.2e-08 | 0.45 | 0.01 | 0.90 | FALSE |
17 | The Cancer Genome Atlas | Prostate Adenocarcinoma | HMGCS1 | 0.04 | 0.03 | blup | 37 | 0.03 | 1.5e-04 | -4.8 | 5.4 | 5.5e-08 | -0.88 | 0.02 | 0.96 | FALSE |
18 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C5orf34 | 0.09 | 0.02 | enet | 9 | 0.04 | 3.7e-04 | -4.9 | -5.7 | 1.2e-08 | 0.58 | 0.01 | 0.84 | FALSE |
19 | The Cancer Genome Atlas | Stomach Adenocarcinoma | NNT | 0.04 | 0.01 | blup | 48 | 0.02 | 1.2e-02 | 4.9 | -5.6 | 1.7e-08 | 0.51 | 0.01 | 0.73 | FALSE |
20 | The Cancer Genome Atlas | Thyroid Carcinoma | MGC42105 | 0.04 | 0.01 | blup | 63 | 0.01 | 4.3e-02 | 1.9 | 5.7 | 1.2e-08 | -0.48 | 0.01 | 0.15 | FALSE |