Best TWAS P=8.96e-18 · Best GWAS P=1.48e-17 conditioned to 0.0194
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | BAIAP2L2 | 0.11 | 0.03 | lasso | 5 | 0.04 | 1.8e-04 | 5.7 | -7.7 | 1.3e-14 | -0.75 | 0.09 | 0.60 | FALSE |
2 | GTEx | Artery Aorta | TMEM184B | 0.17 | 0.07 | enet | 34 | 0.03 | 1.2e-02 | 7.2 | -7.0 | 2.1e-12 | -0.67 | 0.05 | 0.75 | FALSE |
3 | GTEx | Artery Aorta | AL021977.1 | 0.13 | 0.00 | enet | 17 | 0.01 | 8.7e-02 | 8.2 | -7.1 | 1.2e-12 | -0.73 | 0.02 | 0.82 | FALSE |
4 | GTEx | Brain Cortex | TMEM184B | 0.29 | 0.12 | lasso | 7 | 0.09 | 1.6e-03 | 7.2 | -6.9 | 5.3e-12 | -0.90 | 0.01 | 0.89 | FALSE |
5 | GTEx | Cells EBV-transformed lymphocytes | PLA2G6 | 0.28 | 0.17 | enet | 13 | 0.18 | 1.3e-06 | -5.4 | 6.6 | 5.0e-11 | 0.70 | 0.13 | 0.79 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | PLA2G6 | 0.23 | 0.09 | lasso | 9 | 0.10 | 9.9e-08 | 6.2 | 6.8 | 1.0e-11 | 0.83 | 0.19 | 0.81 | FALSE |
7 | GTEx | Esophagus Gastroesophageal Junction | PLA2G6 | 0.28 | 0.24 | lasso | 5 | 0.23 | 1.1e-08 | -5.4 | 5.9 | 3.4e-09 | 0.65 | 0.43 | 0.50 | FALSE |
8 | GTEx | Esophagus Mucosa | PLA2G6 | 0.22 | 0.02 | lasso | 6 | 0.04 | 1.9e-03 | 6.2 | 6.5 | 9.0e-11 | 0.80 | 0.04 | 0.95 | FALSE |
9 | GTEx | Nerve Tibial | PLA2G6 | 0.34 | 0.08 | lasso | 8 | 0.11 | 2.9e-08 | -5.4 | 6.5 | 5.6e-11 | 0.74 | 0.12 | 0.88 | FALSE |
10 | GTEx | Nerve Tibial | MAFF | 0.14 | 0.06 | lasso | 3 | 0.05 | 1.2e-04 | 8.5 | -8.2 | 1.9e-16 | -0.99 | 0.00 | 1.00 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | BAIAP2L2 | 0.09 | 0.09 | lasso | 4 | 0.09 | 5.5e-08 | 5.5 | -5.6 | 1.6e-08 | -0.77 | 0.21 | 0.79 | FALSE |
12 | GTEx | Thyroid | PLA2G6 | 0.34 | 0.20 | lasso | 5 | 0.18 | 4.5e-14 | -5.4 | 6.2 | 6.9e-10 | 0.68 | 0.88 | 0.12 | FALSE |
13 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PLA2G6 | 0.05 | 0.01 | blup | 76 | 0.01 | 7.7e-02 | 7.5 | 8.6 | 9.0e-18 | 0.85 | 0.01 | 0.79 | TRUE |
14 | The Cancer Genome Atlas | Thyroid Carcinoma | PLA2G6 | 0.03 | 0.02 | lasso | 2 | 0.03 | 6.5e-04 | 7.0 | 6.9 | 6.5e-12 | 0.82 | 0.07 | 0.32 | FALSE |