[Hub]/) : Traits : Leg fat percentage (right) : ← →

chr17:65,123,352-66,885,526

Best TWAS P=6.27e-16 · Best GWAS P=3.67e-16 conditioned to 1

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	GTEx	Adipose Subcutaneous	LINC00674	0.12	0.13	enet	6	0.14	9.9e-12	6.6	6.9	5.7e-12	0.79	0.95	0.05	FALSE
2	GTEx	Adipose Subcutaneous	SH3GL1P3	0.08	0.06	lasso	5	0.04	2.5e-04	6.6	6.6	3.4e-11	0.80	0.06	0.90	FALSE
3	GTEx	Adipose Subcutaneous	RP11-147L13.8	0.28	0.09	enet	27	0.23	9.7e-19	4.8	5.4	6.5e-08	0.46	1.00	0.00	FALSE
4	GTEx	Artery Aorta	LINC00674	0.12	0.00	lasso	5	0.01	1.5e-01	4.8	5.7	9.7e-09	0.58	0.07	0.35	FALSE
5	GTEx	Brain Cerebellum	BPTF	0.22	-0.01	lasso	10	-0.01	6.9e-01	6.3	-6.6	3.1e-11	-0.85	0.04	0.48	FALSE
6	GTEx	Brain Cortex	C17orf58	0.34	0.09	lasso	6	0.13	2.4e-04	8.0	7.5	4.4e-14	0.95	0.03	0.95	FALSE
7	GTEx	Cells Transformed fibroblasts	LINC00674	0.30	0.31	enet	10	0.32	1.5e-24	6.6	7.1	1.1e-12	0.86	1.00	0.00	FALSE
8	GTEx	Cells Transformed fibroblasts	LRRC37A16P	0.50	0.46	lasso	8	0.47	1.1e-38	6.6	6.8	8.9e-12	0.84	1.00	0.00	FALSE
9	GTEx	Cells Transformed fibroblasts	SH3GL1P3	0.26	0.31	lasso	7	0.31	1.5e-23	6.6	7.5	8.9e-14	0.90	0.97	0.03	FALSE
10	GTEx	Colon Sigmoid	LINC00674	0.42	0.09	lasso	8	0.12	5.5e-05	6.7	6.6	4.3e-11	0.80	0.13	0.69	FALSE
11	GTEx	Colon Sigmoid	RP11-147L13.8	0.12	0.20	lasso	3	0.15	4.4e-06	4.8	5.2	2.2e-07	0.51	0.34	0.47	FALSE
12	GTEx	Esophagus Mucosa	LRRC37A16P	0.11	0.06	enet	13	0.08	7.5e-06	5.6	-5.5	4.5e-08	-0.67	0.14	0.79	FALSE
13	GTEx	Esophagus Muscularis	LINC00674	0.11	0.04	lasso	6	0.07	7.9e-05	4.8	6.8	1.2e-11	0.77	0.14	0.84	FALSE
14	GTEx	Heart Atrial Appendage	LINC00674	0.14	0.08	lasso	17	0.09	1.1e-04	4.8	6.7	1.7e-11	0.73	0.05	0.87	FALSE
15	GTEx	Lung	LINC00674	0.14	0.03	enet	22	0.08	2.1e-06	8.1	6.6	4.3e-11	0.80	0.05	0.95	FALSE
16	GTEx	Muscle Skeletal	LRRC37A16P	0.14	0.04	lasso	5	0.08	3.3e-08	4.8	-5.7	1.4e-08	-0.59	0.99	0.00	FALSE
17	GTEx	Nerve Tibial	LINC00674	0.09	0.01	enet	13	0.03	2.2e-03	4.8	5.6	2.8e-08	0.65	0.19	0.25	FALSE
18	GTEx	Nerve Tibial	LRRC37A16P	0.09	0.08	lasso	4	0.06	2.7e-05	6.7	6.8	1.1e-11	0.84	0.11	0.78	FALSE
19	GTEx	Skin Sun Exposed Lower leg	BPTF	0.10	0.01	enet	14	0.03	2.7e-03	6.4	-6.0	1.9e-09	-0.69	0.05	0.79	FALSE
20	GTEx	Spleen	C17orf58	0.30	-0.01	lasso	8	-0.01	4.6e-01	4.6	6.6	5.1e-11	0.81	0.03	0.36	FALSE
21	GTEx	Stomach	RP11-147L13.8	0.23	-0.01	enet	9	0.01	8.1e-02	3.9	6.5	8.2e-11	0.57	0.04	0.18	FALSE
22	GTEx	Thyroid	LINC00674	0.09	0.10	enet	16	0.12	4.0e-09	4.8	5.2	2.2e-07	0.61	0.58	0.38	FALSE
23	GTEx	Thyroid	SH3GL1P3	0.08	0.00	lasso	3	0.00	2.8e-01	4.8	5.5	4.3e-08	0.56	0.05	0.46	FALSE
24	YFS	Blood	KPNA2	0.01	0.01	blup	312	0.01	2.8e-04	6.7	-7.9	3.6e-15	-0.86	0.05	0.93	FALSE
25	The Cancer Genome Atlas	Thyroid Carcinoma	C17orf58	0.02	0.02	lasso	2	0.01	1.8e-02	8.1	8.1	6.3e-16	1.00	0.00	0.76	TRUE