Best TWAS P=1.76e-15 · Best GWAS P=2.32e-12 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DTX2P1-UPK3BP1-PMS2P11 | 0.18 | 0.09 | enet | 21 | 0.12 | 6.1e-15 | 6.48 | 8.0 | 1.8e-15 | 0.82 | 0.00 | 1.00 | TRUE |
2 | GTEx | Adipose Subcutaneous | RP11-467H10.2 | 0.12 | 0.00 | lasso | 6 | 0.01 | 2.1e-02 | 2.81 | 5.3 | 1.3e-07 | 0.05 | 0.13 | 0.04 | FALSE |
3 | GTEx | Adipose Visceral Omentum | TMEM60 | 0.20 | 0.13 | lasso | 8 | 0.11 | 2.3e-06 | -5.45 | -5.5 | 2.9e-08 | -0.01 | 0.06 | 0.94 | FALSE |
4 | GTEx | Artery Aorta | GSAP | 0.19 | 0.07 | lasso | 2 | 0.04 | 2.8e-03 | 4.83 | -5.4 | 8.5e-08 | -0.03 | 0.26 | 0.03 | TRUE |
5 | GTEx | Artery Tibial | TMEM60 | 0.07 | 0.05 | enet | 12 | 0.02 | 6.6e-03 | -5.29 | -5.5 | 4.0e-08 | 0.00 | 0.03 | 0.94 | FALSE |
6 | GTEx | Brain Frontal Cortex BA9 | GSAP | 0.38 | 0.22 | lasso | 6 | 0.21 | 3.0e-06 | 4.95 | -6.0 | 1.6e-09 | -0.13 | 0.14 | 0.20 | TRUE |
7 | GTEx | Cells Transformed fibroblasts | TMEM60 | 0.25 | 0.20 | lasso | 4 | 0.20 | 1.5e-14 | -5.29 | -5.2 | 1.6e-07 | -0.02 | 0.03 | 0.97 | FALSE |
8 | GTEx | Esophagus Gastroesophageal Junction | RSBN1L-AS1 | 0.38 | 0.41 | lasso | 12 | 0.44 | 1.2e-17 | -5.45 | -5.2 | 2.6e-07 | -0.03 | 0.06 | 0.94 | FALSE |
9 | GTEx | Esophagus Mucosa | TMEM60 | 0.06 | 0.04 | lasso | 2 | 0.04 | 1.0e-03 | -5.29 | -5.2 | 2.2e-07 | -0.02 | 0.03 | 0.96 | FALSE |
10 | GTEx | Muscle Skeletal | TMEM60 | 0.11 | 0.12 | lasso | 4 | 0.12 | 4.6e-12 | -5.29 | 5.5 | 4.5e-08 | 0.02 | 0.02 | 0.98 | FALSE |
11 | GTEx | Nerve Tibial | TMEM60 | 0.14 | 0.14 | lasso | 8 | 0.12 | 1.1e-08 | -5.29 | -5.3 | 1.3e-07 | -0.02 | 0.05 | 0.95 | FALSE |
12 | GTEx | Ovary | TMEM60 | 0.23 | 0.19 | enet | 7 | 0.13 | 5.2e-04 | -5.04 | -5.2 | 1.9e-07 | 0.01 | 0.07 | 0.66 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | TMEM60 | 0.10 | 0.10 | lasso | 3 | 0.09 | 1.4e-07 | -5.29 | -5.3 | 1.2e-07 | -0.01 | 0.02 | 0.98 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | DTX2P1 | 0.16 | 0.03 | enet | 22 | 0.05 | 4.8e-05 | 7.01 | 5.3 | 1.3e-07 | 0.70 | 0.00 | 0.99 | FALSE |
15 | GTEx | Testis | RSBN1L-AS1 | 0.16 | 0.12 | lasso | 8 | 0.16 | 1.5e-07 | -4.89 | -5.3 | 1.1e-07 | 0.00 | 0.10 | 0.89 | FALSE |
16 | GTEx | Thyroid | AC007000.12 | 0.13 | 0.08 | enet | 24 | 0.07 | 2.6e-06 | -4.82 | -5.6 | 2.6e-08 | -0.18 | 0.66 | 0.02 | FALSE |
17 | GTEx | Whole Blood | TMEM60 | 0.05 | 0.04 | enet | 7 | 0.03 | 5.4e-04 | -5.12 | -5.4 | 5.8e-08 | -0.02 | 0.04 | 0.96 | FALSE |
18 | METSIM | Adipose | TMEM60 | 0.10 | 0.07 | enet | 9 | 0.08 | 2.1e-12 | 5.32 | -5.3 | 1.1e-07 | -0.02 | 0.02 | 0.98 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | RSBN1L | 0.09 | 0.07 | enet | 42 | 0.08 | 9.9e-11 | -4.31 | -6.0 | 2.1e-09 | -0.03 | 0.08 | 0.91 | TRUE |
20 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TMEM60 | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.3e-05 | 5.65 | -5.7 | 1.6e-08 | 0.00 | 0.00 | 1.00 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PMS2L11 | 0.05 | 0.02 | enet | 3 | 0.06 | 2.5e-07 | -0.31 | 5.2 | 1.6e-07 | 0.71 | 0.01 | 0.97 | TRUE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RSBN1L | 0.02 | 0.02 | blup | 58 | 0.02 | 3.4e-03 | -5.29 | 5.5 | 3.7e-08 | 0.01 | 0.02 | 0.82 | FALSE |
23 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TMEM60 | 0.02 | 0.03 | blup | 29 | 0.02 | 6.8e-03 | 5.65 | -5.5 | 3.6e-08 | -0.01 | 0.00 | 0.92 | FALSE |
24 | The Cancer Genome Atlas | Soft Tissue Sarcoma | PHTF2 | 0.06 | 0.04 | blup | 72 | 0.04 | 2.0e-03 | 5.07 | -5.2 | 1.9e-07 | -0.01 | 0.04 | 0.72 | FALSE |