Best TWAS P=6e-10 · Best GWAS P=4.64e-11 conditioned to 7.24e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | PPP2R3C | 0.21 | 0.12 | lasso | 10 | 0.14 | 2.6e-11 | -5.9 | 5.5 | 3.5e-08 | 0.15 | 0.15 | 0.85 | FALSE |
| 2 | GTEx | Cells Transformed fibroblasts | PPP2R3C | 0.31 | 0.10 | lasso | 10 | 0.18 | 4.0e-13 | -5.9 | 5.9 | 3.5e-09 | 0.26 | 0.13 | 0.87 | FALSE |
| 3 | GTEx | Cells Transformed fibroblasts | CFL2 | 0.14 | 0.08 | enet | 39 | 0.11 | 9.9e-09 | -2.1 | -6.0 | 1.5e-09 | -0.06 | 0.59 | 0.03 | TRUE |
| 4 | NTR | Blood | NFKBIA | 0.26 | 0.09 | lasso | 10 | 0.12 | 3.4e-36 | -4.1 | -5.9 | 2.8e-09 | -0.50 | 1.00 | 0.00 | FALSE |
| 5 | YFS | Blood | KIAA0391 | 0.29 | 0.36 | lasso | 7 | 0.38 | 5.8e-132 | -5.9 | -5.8 | 6.4e-09 | -0.18 | 0.08 | 0.92 | FALSE |
| 6 | YFS | Blood | NFKBIA | 0.24 | 0.11 | enet | 33 | 0.17 | 3.5e-53 | -4.0 | -6.2 | 6.0e-10 | -0.43 | 1.00 | 0.00 | TRUE |
| 7 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PPP2R3C | 0.08 | 0.04 | blup | 51 | 0.07 | 7.8e-09 | -4.8 | 6.1 | 9.3e-10 | 0.27 | 0.01 | 0.99 | FALSE |