Best TWAS P=1.33e-11 · Best GWAS P=9.82e-17 conditioned to 1.63e-17
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | USP36 | 0.14 | 0.13 | lasso | 3 | 0.13 | 1.7e-15 | 5.9 | -6.0 | 2.2e-09 | 0.02 | 0.05 | 0.95 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | USP36 | 0.50 | 0.16 | enet | 20 | 0.07 | 5.7e-03 | 5.9 | -6.3 | 3.4e-10 | -0.03 | 0.05 | 0.88 | FALSE |
3 | GTEx | Brain Nucleus accumbens basal ganglia | USP36 | 0.36 | 0.23 | lasso | 5 | 0.20 | 4.8e-06 | 6.7 | -6.8 | 1.3e-11 | 0.02 | 0.01 | 0.98 | TRUE |
4 | GTEx | Cells Transformed fibroblasts | CBX8 | 0.21 | 0.10 | lasso | 3 | 0.08 | 1.4e-06 | -5.5 | 5.5 | 3.6e-08 | 0.05 | 0.00 | 1.00 | FALSE |
5 | GTEx | Esophagus Mucosa | USP36 | 0.11 | 0.04 | enet | 13 | 0.06 | 1.1e-04 | 6.1 | -5.8 | 8.0e-09 | 0.04 | 0.03 | 0.96 | FALSE |
6 | GTEx | Esophagus Muscularis | USP36 | 0.18 | 0.16 | lasso | 3 | 0.08 | 2.5e-05 | 5.9 | 5.5 | 3.8e-08 | 0.00 | 0.09 | 0.91 | FALSE |
7 | GTEx | Lung | CBX8 | 0.28 | 0.19 | enet | 24 | 0.18 | 1.4e-13 | -5.7 | 5.7 | 1.5e-08 | 0.04 | 0.00 | 1.00 | TRUE |
8 | GTEx | Muscle Skeletal | CYTH1 | 0.13 | 0.12 | lasso | 3 | 0.13 | 2.5e-12 | 6.1 | 5.9 | 3.8e-09 | -0.02 | 0.14 | 0.86 | FALSE |
9 | GTEx | Muscle Skeletal | RPTOR | 0.14 | 0.05 | enet | 27 | 0.09 | 8.4e-09 | -4.4 | -5.6 | 1.8e-08 | -0.02 | 0.98 | 0.00 | TRUE |
10 | GTEx | Nerve Tibial | CBX8 | 0.16 | 0.14 | lasso | 4 | 0.14 | 5.3e-10 | -5.5 | 5.7 | 1.5e-08 | 0.05 | 0.00 | 1.00 | FALSE |
11 | GTEx | Testis | USP36 | 0.32 | 0.24 | lasso | 6 | 0.26 | 6.2e-12 | 5.2 | -6.0 | 2.3e-09 | 0.03 | 0.12 | 0.88 | FALSE |
12 | GTEx | Thyroid | USP36 | 0.21 | 0.15 | enet | 45 | 0.16 | 1.6e-12 | 5.7 | -5.7 | 1.4e-08 | 0.05 | 0.38 | 0.62 | FALSE |
13 | GTEx | Thyroid | CYTH1 | 0.24 | 0.07 | lasso | 11 | 0.06 | 3.4e-05 | 6.0 | 5.2 | 1.8e-07 | -0.04 | 0.05 | 0.94 | FALSE |
14 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | USP36 | 0.10 | 0.02 | lasso | 4 | 0.05 | 6.6e-03 | 6.5 | -5.4 | 8.5e-08 | 0.06 | 0.02 | 0.85 | FALSE |