Best TWAS P=5.85e-16 · Best GWAS P=4.66e-14 conditioned to 0.527
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PLEC | 0.05 | 0.07 | enet | 9 | 0.07 | 8.5e-09 | -7.5 | 8.1 | 5.9e-16 | -0.94 | 0.01 | 0.99 | TRUE |
2 | GTEx | Adipose Subcutaneous | PLEC | 0.14 | 0.14 | enet | 13 | 0.16 | 6.2e-13 | -7.0 | 6.5 | 6.2e-11 | -0.94 | 0.08 | 0.92 | FALSE |
3 | GTEx | Adipose Visceral Omentum | PLEC | 0.17 | 0.15 | lasso | 5 | 0.18 | 9.2e-10 | -7.3 | 7.2 | 8.6e-13 | -0.97 | 0.03 | 0.97 | FALSE |
4 | GTEx | Adipose Visceral Omentum | PARP10 | 0.07 | 0.03 | lasso | 4 | 0.01 | 6.7e-02 | -5.4 | 5.9 | 2.9e-09 | -0.87 | 0.07 | 0.64 | FALSE |
5 | GTEx | Adrenal Gland | PLEC | 0.28 | 0.16 | enet | 14 | 0.19 | 1.6e-07 | -7.1 | 6.3 | 2.2e-10 | -0.85 | 0.04 | 0.95 | FALSE |
6 | GTEx | Artery Aorta | PLEC | 0.18 | 0.16 | lasso | 3 | 0.16 | 2.6e-09 | -7.1 | 7.2 | 8.7e-13 | -0.94 | 0.05 | 0.95 | FALSE |
7 | GTEx | Artery Coronary | PLEC | 0.20 | 0.03 | enet | 19 | 0.07 | 2.6e-03 | -7.1 | 6.3 | 3.5e-10 | -0.77 | 0.03 | 0.67 | FALSE |
8 | GTEx | Artery Tibial | PLEC | 0.19 | 0.17 | lasso | 2 | 0.20 | 2.2e-15 | -7.1 | 7.2 | 8.0e-13 | -0.95 | 0.09 | 0.91 | FALSE |
9 | GTEx | Brain Cerebellar Hemisphere | PLEC | 0.20 | 0.21 | enet | 12 | 0.22 | 2.2e-06 | -6.8 | 7.6 | 2.8e-14 | -0.94 | 0.03 | 0.96 | FALSE |
10 | GTEx | Brain Cerebellum | PLEC | 0.33 | 0.15 | enet | 16 | 0.15 | 2.6e-05 | -7.5 | 6.8 | 1.2e-11 | -0.95 | 0.01 | 0.98 | FALSE |
11 | GTEx | Breast Mammary Tissue | PLEC | 0.17 | 0.20 | lasso | 4 | 0.22 | 1.3e-11 | -7.2 | 7.2 | 4.3e-13 | -0.97 | 0.03 | 0.97 | FALSE |
12 | GTEx | Breast Mammary Tissue (Male) | PLEC | 0.24 | 0.19 | lasso | 4 | 0.18 | 5.3e-05 | -7.0 | 7.2 | 4.7e-13 | -0.97 | 0.03 | 0.92 | FALSE |
13 | GTEx | Breast Mammary Tissue (Female) | PLEC | 0.19 | 0.17 | lasso | 2 | 0.17 | 7.9e-06 | -6.8 | 7.1 | 1.1e-12 | -0.96 | 0.03 | 0.92 | FALSE |
14 | GTEx | Cells Transformed fibroblasts | PLEC | 0.30 | 0.30 | lasso | 4 | 0.40 | 4.0e-32 | -7.2 | 7.2 | 6.4e-13 | -0.95 | 0.07 | 0.93 | FALSE |
15 | GTEx | Colon Sigmoid | PLEC | 0.36 | 0.06 | lasso | 2 | 0.02 | 5.1e-02 | -5.4 | 6.2 | 4.5e-10 | -0.89 | 0.19 | 0.71 | FALSE |
16 | GTEx | Colon Sigmoid | GPAA1 | 0.15 | 0.07 | enet | 17 | 0.05 | 1.0e-02 | -7.3 | -5.6 | 2.6e-08 | 0.83 | 0.02 | 0.81 | FALSE |
17 | GTEx | Colon Transverse | PARP10 | 0.10 | 0.04 | lasso | 8 | 0.06 | 9.0e-04 | -5.4 | 6.6 | 3.6e-11 | -0.88 | 0.12 | 0.74 | FALSE |
18 | GTEx | Esophagus Mucosa | PLEC | 0.11 | 0.04 | lasso | 4 | 0.05 | 2.7e-04 | -6.5 | 6.5 | 8.5e-11 | -0.93 | 0.04 | 0.94 | FALSE |
19 | GTEx | Esophagus Mucosa | PARP10 | 0.08 | 0.03 | enet | 17 | 0.04 | 1.0e-03 | -7.4 | 7.4 | 1.6e-13 | -0.81 | 0.02 | 0.96 | FALSE |
20 | GTEx | Esophagus Muscularis | PLEC | 0.20 | 0.11 | enet | 18 | 0.13 | 2.3e-08 | -7.3 | 6.8 | 8.9e-12 | -0.86 | 0.02 | 0.98 | FALSE |
21 | GTEx | Lung | PLEC | 0.26 | 0.29 | lasso | 6 | 0.30 | 2.6e-23 | -7.1 | 7.1 | 1.4e-12 | -0.94 | 0.12 | 0.88 | FALSE |
22 | GTEx | Muscle Skeletal | GRINA | 0.08 | 0.06 | lasso | 5 | 0.06 | 3.8e-06 | -5.3 | -6.4 | 1.2e-10 | 0.87 | 0.15 | 0.85 | FALSE |
23 | GTEx | Nerve Tibial | PLEC | 0.27 | 0.30 | enet | 27 | 0.38 | 2.4e-28 | -7.0 | 7.0 | 2.6e-12 | -0.94 | 0.09 | 0.91 | FALSE |
24 | GTEx | Nerve Tibial | PARP10 | 0.08 | 0.06 | enet | 7 | 0.07 | 2.2e-05 | -6.2 | 7.3 | 3.9e-13 | -0.85 | 0.35 | 0.62 | FALSE |
25 | GTEx | Ovary | PARP10 | 0.22 | 0.05 | lasso | 4 | 0.07 | 6.8e-03 | -6.8 | 7.3 | 2.6e-13 | -0.86 | 0.03 | 0.37 | FALSE |
26 | GTEx | Pancreas | PLEC | 0.15 | 0.10 | lasso | 3 | 0.13 | 3.5e-06 | 4.2 | 6.7 | 2.8e-11 | -0.69 | 0.04 | 0.93 | FALSE |
27 | GTEx | Pituitary | PLEC | 0.31 | 0.39 | lasso | 4 | 0.44 | 2.7e-12 | -6.8 | 7.2 | 4.7e-13 | -0.97 | 0.04 | 0.96 | FALSE |
28 | GTEx | Prostate | PLEC | 0.22 | 0.12 | lasso | 4 | 0.18 | 2.7e-05 | -7.4 | 7.3 | 2.5e-13 | -0.92 | 0.02 | 0.95 | FALSE |
29 | GTEx | Skin Sun Exposed Lower leg | PLEC | 0.05 | 0.03 | lasso | 4 | 0.03 | 2.4e-03 | -7.4 | 7.0 | 2.0e-12 | -0.97 | 0.02 | 0.92 | FALSE |
30 | GTEx | Skin Sun Exposed Lower leg | PARP10 | 0.06 | 0.04 | lasso | 3 | 0.04 | 1.4e-04 | -6.8 | 6.9 | 4.6e-12 | -0.93 | 0.07 | 0.91 | FALSE |
31 | GTEx | Testis | PLEC | 0.25 | 0.23 | lasso | 7 | 0.27 | 1.9e-12 | -7.0 | 7.3 | 2.2e-13 | -0.97 | 0.04 | 0.96 | FALSE |
32 | GTEx | Thyroid | PLEC | 0.20 | 0.26 | lasso | 7 | 0.29 | 9.2e-23 | -6.5 | 7.1 | 1.6e-12 | -0.95 | 0.13 | 0.87 | FALSE |
33 | GTEx | Thyroid | PARP10 | 0.08 | 0.09 | enet | 6 | 0.09 | 4.0e-07 | -5.9 | 5.7 | 9.5e-09 | -0.86 | 0.87 | 0.12 | FALSE |
34 | GTEx | Thyroid | PUF60 | 0.11 | 0.05 | enet | 9 | 0.09 | 1.4e-07 | -3.6 | -5.6 | 2.3e-08 | 0.03 | 0.60 | 0.05 | TRUE |
35 | GTEx | Whole Blood | PLEC | 0.15 | 0.15 | enet | 9 | 0.19 | 2.1e-17 | -7.5 | 7.5 | 6.8e-14 | -0.99 | 0.01 | 0.99 | FALSE |
36 | METSIM | Adipose | EPPK1 | 0.03 | 0.00 | blup | 261 | 0.01 | 2.3e-02 | -7.0 | 5.4 | 6.1e-08 | -0.66 | 0.02 | 0.60 | FALSE |
37 | METSIM | Adipose | PARP10 | 0.08 | 0.13 | lasso | 4 | 0.13 | 1.4e-18 | -5.8 | 5.9 | 3.6e-09 | -0.87 | 0.65 | 0.35 | FALSE |
38 | METSIM | Adipose | PLEC | 0.08 | 0.09 | bslmm | 256 | 0.09 | 1.1e-13 | -7.4 | 6.1 | 8.2e-10 | -0.94 | 0.01 | 0.99 | FALSE |
39 | NTR | Blood | GRINA | 0.02 | 0.03 | lasso | 5 | 0.02 | 1.8e-08 | -5.8 | 5.9 | 3.9e-09 | -0.85 | 0.20 | 0.80 | FALSE |
40 | ROSMAP | Brain Pre-frontal Cortex | PLEC | 0.34 | 0.16 | lasso | 5 | 0.16 | 5.7e-20 | -6.8 | 6.8 | 9.9e-12 | -0.92 | 0.00 | 1.00 | FALSE |
41 | ROSMAP | Brain Pre-frontal Cortex | PARP10 | 0.10 | 0.08 | lasso | 4 | 0.08 | 3.7e-10 | -6.8 | 5.9 | 3.0e-09 | -0.88 | 0.00 | 1.00 | FALSE |
42 | YFS | Blood | GRINA | 0.37 | 0.54 | enet | 14 | 0.55 | 2.3e-221 | -5.4 | 5.9 | 3.8e-09 | -0.84 | 1.00 | 0.00 | FALSE |
43 | YFS | Blood | NRBP2 | 0.21 | 0.03 | bslmm | 254 | 0.06 | 1.2e-18 | -4.3 | 6.0 | 1.7e-09 | -0.27 | 1.00 | 0.00 | FALSE |
44 | YFS | Blood | PARP10 | 0.11 | 0.07 | bslmm | 235 | 0.08 | 1.1e-24 | -6.2 | 5.6 | 1.8e-08 | -0.73 | 0.99 | 0.01 | FALSE |
45 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PLEC | 0.03 | 0.02 | lasso | 2 | 0.02 | 8.9e-05 | -6.8 | 6.6 | 3.2e-11 | -0.92 | 0.00 | 1.00 | FALSE |
46 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PLEC | 0.05 | 0.04 | lasso | 1 | 0.03 | 8.9e-05 | -6.8 | 6.8 | 1.5e-11 | -0.92 | 0.00 | 0.99 | FALSE |
47 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PLEC | 0.06 | 0.05 | enet | 2 | 0.05 | 1.0e-03 | -6.8 | 6.9 | 5.6e-12 | -0.92 | 0.00 | 0.92 | FALSE |
48 | The Cancer Genome Atlas | Lung Adenocarcinoma | PLEC | 0.07 | 0.05 | lasso | 1 | 0.05 | 8.1e-07 | -6.8 | 6.8 | 1.5e-11 | -0.92 | 0.00 | 1.00 | FALSE |
49 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PLEC | 0.02 | 0.01 | blup | 4 | 0.01 | 1.1e-02 | -6.8 | 7.0 | 1.9e-12 | -0.83 | 0.00 | 0.88 | FALSE |
50 | The Cancer Genome Atlas | Thyroid Carcinoma | PLEC | 0.13 | 0.13 | lasso | 2 | 0.13 | 7.9e-13 | -6.8 | 6.8 | 1.5e-11 | -0.92 | 0.00 | 1.00 | FALSE |