Best TWAS P=5.25e-15 · Best GWAS P=1.11e-13 conditioned to 0.00121
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOSC6 | 0.24 | 0.25 | enet | 14 | 0.24 | 1.5e-29 | -5.23 | -5.2 | 1.9e-07 | 0.28 | 0.96 | 0.04 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | WWP2 | 0.10 | 0.04 | bslmm | 274 | 0.06 | 4.4e-08 | -5.60 | 5.7 | 1.1e-08 | -0.39 | 0.98 | 0.01 | FALSE |
3 | GTEx | Adipose Subcutaneous | EXOSC6 | 0.27 | 0.28 | enet | 26 | 0.32 | 3.1e-27 | -5.22 | -5.7 | 1.5e-08 | 0.27 | 0.96 | 0.04 | FALSE |
4 | GTEx | Adipose Subcutaneous | RP11-296I10.6 | 0.30 | 0.27 | lasso | 7 | 0.31 | 8.4e-26 | -5.21 | -5.3 | 1.2e-07 | 0.26 | 0.96 | 0.04 | FALSE |
5 | GTEx | Adipose Visceral Omentum | EXOSC6 | 0.26 | 0.29 | lasso | 6 | 0.32 | 3.3e-17 | -5.22 | -5.3 | 1.2e-07 | 0.31 | 0.96 | 0.04 | FALSE |
6 | GTEx | Adrenal Gland | EXOSC6 | 0.22 | 0.18 | enet | 6 | 0.17 | 1.1e-06 | -5.22 | -5.5 | 3.3e-08 | 0.22 | 0.79 | 0.04 | FALSE |
7 | GTEx | Artery Aorta | EXOSC6 | 0.36 | 0.32 | enet | 8 | 0.34 | 1.8e-19 | -5.22 | -5.2 | 1.6e-07 | 0.22 | 0.96 | 0.04 | FALSE |
8 | GTEx | Artery Coronary | EXOSC6 | 0.29 | 0.24 | enet | 10 | 0.20 | 2.1e-07 | -5.22 | -5.3 | 8.8e-08 | 0.22 | 0.95 | 0.05 | FALSE |
9 | GTEx | Artery Tibial | WWP2 | 0.13 | 0.01 | enet | 17 | 0.02 | 4.9e-03 | -5.85 | 6.3 | 3.9e-10 | -0.38 | 0.50 | 0.06 | FALSE |
10 | GTEx | Artery Tibial | EXOSC6 | 0.27 | 0.32 | enet | 10 | 0.30 | 5.5e-24 | -5.21 | -5.4 | 5.6e-08 | 0.25 | 0.96 | 0.04 | FALSE |
11 | GTEx | Brain Cerebellar Hemisphere | PDXDC2P | 0.33 | 0.16 | enet | 11 | 0.27 | 1.4e-07 | -5.79 | -5.6 | 1.9e-08 | 0.45 | 0.55 | 0.17 | FALSE |
12 | GTEx | Brain Cerebellar Hemisphere | EXOSC6 | 0.51 | 0.15 | lasso | 11 | 0.26 | 2.9e-07 | -5.21 | -6.0 | 1.5e-09 | 0.40 | 0.44 | 0.32 | FALSE |
13 | GTEx | Brain Cerebellar Hemisphere | RP11-296I10.6 | 0.19 | 0.20 | lasso | 5 | 0.19 | 1.5e-05 | -5.18 | -5.3 | 1.4e-07 | 0.24 | 0.30 | 0.16 | FALSE |
14 | GTEx | Brain Cerebellum | PDPR | 0.23 | 0.06 | enet | 20 | 0.11 | 3.7e-04 | -5.18 | -7.2 | 8.8e-13 | 0.21 | 0.08 | 0.12 | FALSE |
15 | GTEx | Brain Cerebellum | RP11-296I10.3 | 0.20 | 0.03 | enet | 12 | 0.14 | 8.8e-05 | -5.21 | -7.8 | 5.2e-15 | 0.28 | 0.05 | 0.15 | TRUE |
16 | GTEx | Brain Cerebellum | RP11-296I10.6 | 0.18 | 0.21 | lasso | 2 | 0.18 | 5.8e-06 | -5.22 | -5.2 | 1.8e-07 | 0.25 | 0.62 | 0.10 | FALSE |
17 | GTEx | Brain Hippocampus | EXOSC6 | 0.17 | 0.06 | lasso | 4 | 0.03 | 6.7e-02 | -5.18 | -5.3 | 9.7e-08 | 0.25 | 0.05 | 0.08 | FALSE |
18 | GTEx | Brain Nucleus accumbens basal ganglia | RP11-296I10.6 | 0.15 | 0.11 | lasso | 3 | 0.08 | 3.0e-03 | -5.22 | -6.2 | 4.3e-10 | 0.38 | 0.10 | 0.28 | FALSE |
19 | GTEx | Breast Mammary Tissue | EXOSC6 | 0.38 | 0.34 | enet | 8 | 0.34 | 2.0e-18 | -5.22 | -5.4 | 7.6e-08 | 0.18 | 0.96 | 0.04 | FALSE |
20 | GTEx | Breast Mammary Tissue | RP11-296I10.6 | 0.31 | 0.30 | enet | 17 | 0.30 | 7.1e-16 | -5.21 | -5.4 | 5.9e-08 | 0.17 | 0.96 | 0.04 | FALSE |
21 | GTEx | Breast Mammary Tissue (Male) | RP11-296I10.6 | 0.32 | 0.42 | lasso | 8 | 0.47 | 1.8e-12 | -5.22 | -5.2 | 1.6e-07 | 0.17 | 0.92 | 0.04 | FALSE |
22 | GTEx | Breast Mammary Tissue (Female) | EXOSC6 | 0.52 | 0.26 | enet | 21 | 0.27 | 1.4e-08 | -5.18 | -7.0 | 2.6e-12 | 0.36 | 0.72 | 0.12 | FALSE |
23 | GTEx | Breast Mammary Tissue (Female) | RP11-296I10.6 | 0.18 | 0.17 | enet | 8 | 0.13 | 1.0e-04 | -5.18 | -5.4 | 7.3e-08 | 0.18 | 0.33 | 0.07 | FALSE |
24 | GTEx | Cells Transformed fibroblasts | AARS | 0.07 | 0.08 | lasso | 2 | 0.07 | 9.7e-06 | -5.22 | 5.2 | 1.8e-07 | -0.21 | 0.89 | 0.04 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | EXOSC6 | 0.18 | 0.19 | enet | 12 | 0.23 | 2.1e-17 | -5.18 | -5.3 | 1.1e-07 | 0.26 | 0.96 | 0.04 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | RP11-296I10.6 | 0.10 | 0.09 | enet | 9 | 0.10 | 6.1e-08 | -5.21 | -5.8 | 6.6e-09 | 0.28 | 0.96 | 0.04 | FALSE |
27 | GTEx | Colon Sigmoid | RP11-296I10.6 | 0.32 | 0.33 | enet | 20 | 0.33 | 2.2e-12 | -5.21 | -5.4 | 5.8e-08 | 0.20 | 0.96 | 0.04 | FALSE |
28 | GTEx | Colon Transverse | EXOSC6 | 0.32 | 0.31 | enet | 8 | 0.31 | 2.1e-15 | -5.22 | -5.5 | 5.0e-08 | 0.23 | 0.96 | 0.04 | FALSE |
29 | GTEx | Esophagus Mucosa | EXOSC6 | 0.12 | 0.20 | enet | 5 | 0.19 | 1.6e-12 | -5.22 | -5.3 | 1.2e-07 | 0.22 | 0.96 | 0.04 | FALSE |
30 | GTEx | Esophagus Muscularis | EXOSC6 | 0.30 | 0.33 | enet | 13 | 0.37 | 6.7e-24 | -5.21 | -5.4 | 8.3e-08 | 0.21 | 0.96 | 0.04 | FALSE |
31 | GTEx | Esophagus Muscularis | RP11-296I10.6 | 0.32 | 0.27 | enet | 24 | 0.32 | 4.0e-20 | -5.22 | -5.3 | 1.3e-07 | 0.21 | 0.97 | 0.03 | FALSE |
32 | GTEx | Heart Atrial Appendage | RP11-296I10.6 | 0.18 | 0.19 | enet | 16 | 0.16 | 1.1e-07 | -5.21 | -5.8 | 6.3e-09 | 0.27 | 0.95 | 0.05 | FALSE |
33 | GTEx | Heart Left Ventricle | EXOSC6 | 0.33 | 0.35 | enet | 18 | 0.34 | 4.0e-19 | -5.27 | -5.1 | 2.9e-07 | 0.20 | 0.95 | 0.05 | FALSE |
34 | GTEx | Lung | EXOSC6 | 0.34 | 0.40 | enet | 8 | 0.39 | 9.6e-32 | -5.27 | -5.3 | 1.4e-07 | 0.21 | 0.95 | 0.05 | FALSE |
35 | GTEx | Muscle Skeletal | EXOSC6 | 0.28 | 0.32 | enet | 20 | 0.32 | 4.2e-32 | -5.21 | -5.4 | 6.1e-08 | 0.26 | 0.96 | 0.04 | FALSE |
36 | GTEx | Muscle Skeletal | RP11-296I10.6 | 0.11 | 0.15 | enet | 16 | 0.15 | 1.8e-14 | -5.22 | -5.4 | 7.5e-08 | 0.29 | 0.96 | 0.04 | FALSE |
37 | GTEx | Nerve Tibial | EXOSC6 | 0.28 | 0.37 | enet | 10 | 0.41 | 1.1e-30 | -5.22 | -5.3 | 1.4e-07 | 0.22 | 0.96 | 0.04 | FALSE |
38 | GTEx | Nerve Tibial | RP11-296I10.6 | 0.32 | 0.40 | enet | 23 | 0.43 | 5.1e-33 | -5.22 | -5.4 | 5.5e-08 | 0.26 | 0.96 | 0.04 | FALSE |
39 | GTEx | Ovary | RP11-296I10.6 | 0.35 | 0.28 | enet | 18 | 0.27 | 2.2e-07 | -5.18 | -6.4 | 2.0e-10 | 0.46 | 0.23 | 0.52 | FALSE |
40 | GTEx | Pancreas | EXOSC6 | 0.38 | 0.36 | lasso | 4 | 0.34 | 7.3e-15 | -5.29 | -5.3 | 1.2e-07 | 0.22 | 0.95 | 0.05 | FALSE |
41 | GTEx | Pancreas | RP11-296I10.6 | 0.20 | 0.17 | enet | 9 | 0.17 | 1.2e-07 | -5.29 | -5.2 | 2.4e-07 | 0.14 | 0.93 | 0.04 | FALSE |
42 | GTEx | Prostate | EXOSC6 | 0.31 | 0.24 | lasso | 6 | 0.23 | 2.2e-06 | -5.21 | -5.3 | 1.5e-07 | 0.22 | 0.48 | 0.05 | FALSE |
43 | GTEx | Prostate | RP11-296I10.6 | 0.20 | 0.18 | lasso | 4 | 0.19 | 1.9e-05 | -5.21 | -5.2 | 1.7e-07 | 0.22 | 0.26 | 0.05 | FALSE |
44 | GTEx | Skin Not Sun Exposed Suprapubic | EXOSC6 | 0.21 | 0.22 | lasso | 2 | 0.22 | 3.6e-12 | -5.18 | 5.2 | 2.2e-07 | -0.23 | 0.96 | 0.04 | FALSE |
45 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-296I10.6 | 0.21 | 0.24 | enet | 17 | 0.24 | 1.4e-13 | -5.21 | -5.2 | 2.3e-07 | 0.22 | 0.96 | 0.04 | FALSE |
46 | GTEx | Skin Sun Exposed Lower leg | EXOSC6 | 0.21 | 0.21 | enet | 10 | 0.22 | 3.9e-18 | -5.21 | -5.3 | 1.1e-07 | 0.25 | 0.96 | 0.04 | FALSE |
47 | GTEx | Skin Sun Exposed Lower leg | RP11-296I10.6 | 0.20 | 0.25 | enet | 15 | 0.24 | 8.4e-20 | -5.21 | -5.1 | 3.1e-07 | 0.22 | 0.96 | 0.04 | FALSE |
48 | GTEx | Spleen | PDXDC2P | 0.44 | 0.26 | lasso | 5 | 0.29 | 4.6e-08 | -5.29 | -5.2 | 1.8e-07 | 0.20 | 0.66 | 0.07 | FALSE |
49 | GTEx | Stomach | EXOSC6 | 0.36 | 0.28 | enet | 9 | 0.26 | 1.6e-12 | -5.21 | -5.2 | 2.7e-07 | 0.21 | 0.96 | 0.04 | FALSE |
50 | GTEx | Stomach | RP11-296I10.6 | 0.24 | 0.15 | enet | 14 | 0.16 | 4.5e-08 | -5.21 | -5.3 | 1.2e-07 | 0.17 | 0.96 | 0.04 | FALSE |
51 | GTEx | Testis | WWP2 | 0.30 | 0.10 | lasso | 5 | 0.16 | 9.2e-08 | 4.78 | 6.2 | 4.0e-10 | -0.53 | 0.64 | 0.06 | FALSE |
52 | GTEx | Thyroid | NOB1 | 0.03 | 0.01 | enet | 6 | 0.02 | 7.7e-03 | 6.01 | -6.8 | 1.5e-11 | 0.73 | 0.20 | 0.36 | TRUE |
53 | GTEx | Thyroid | EXOSC6 | 0.12 | 0.14 | lasso | 2 | 0.15 | 7.9e-12 | -5.22 | -5.2 | 1.6e-07 | 0.21 | 0.96 | 0.04 | FALSE |
54 | GTEx | Thyroid | CTD-2033A16.3 | 0.03 | 0.02 | enet | 7 | 0.02 | 6.7e-03 | 3.93 | -6.0 | 1.6e-09 | 0.66 | 0.21 | 0.27 | FALSE |
55 | GTEx | Whole Blood | EXOSC6 | 0.14 | 0.12 | enet | 10 | 0.11 | 3.5e-10 | -5.21 | -5.4 | 8.1e-08 | 0.21 | 0.96 | 0.04 | FALSE |
56 | GTEx | Whole Blood | RP11-296I10.6 | 0.08 | 0.07 | enet | 16 | 0.09 | 2.3e-08 | -5.21 | -5.6 | 2.3e-08 | 0.23 | 0.96 | 0.04 | FALSE |
57 | METSIM | Adipose | CLEC18A | 0.26 | 0.18 | lasso | 15 | 0.27 | 4.4e-40 | 3.75 | -5.6 | 2.2e-08 | 0.30 | 1.00 | 0.00 | FALSE |
58 | METSIM | Adipose | EXOSC6 | 0.30 | 0.24 | bslmm | 194 | 0.25 | 5.8e-37 | -5.21 | -5.2 | 2.2e-07 | 0.24 | 0.96 | 0.04 | FALSE |
59 | NTR | Blood | EXOSC6 | 0.06 | 0.07 | bslmm | 195 | 0.07 | 2.7e-22 | -5.22 | -5.7 | 1.0e-08 | 0.32 | 0.96 | 0.04 | FALSE |
60 | ROSMAP | Brain Pre-frontal Cortex | RP11-296I10.6 | 0.36 | 0.42 | enet | 19 | 0.42 | 6.7e-59 | -5.23 | -5.5 | 4.2e-08 | 0.26 | 0.96 | 0.04 | FALSE |
61 | YFS | Blood | EXOSC6 | 0.24 | 0.24 | lasso | 5 | 0.25 | 2.4e-81 | -5.22 | -5.5 | 3.4e-08 | 0.27 | 0.96 | 0.04 | FALSE |
62 | YFS | Blood | PDPR | 0.02 | 0.00 | enet | 20 | 0.01 | 1.8e-05 | -0.59 | 5.4 | 6.2e-08 | -0.47 | 0.05 | 0.09 | FALSE |
63 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CLEC18A | 0.16 | 0.17 | enet | 10 | 0.19 | 6.8e-37 | -5.60 | -5.2 | 1.7e-07 | 0.49 | 0.08 | 0.92 | FALSE |
64 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EXOSC6 | 0.08 | 0.08 | lasso | 2 | 0.08 | 2.8e-15 | -5.23 | -5.2 | 1.6e-07 | 0.22 | 0.00 | 1.00 | FALSE |
65 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NFAT5 | 0.02 | 0.01 | enet | 5 | 0.01 | 6.6e-04 | 4.49 | 7.3 | 2.6e-13 | -0.74 | 0.02 | 0.56 | FALSE |
66 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | CLEC18A | 0.10 | 0.06 | lasso | 2 | 0.04 | 6.3e-03 | -5.60 | -5.6 | 2.1e-08 | 0.52 | 0.02 | 0.54 | FALSE |
67 | The Cancer Genome Atlas | Colon Adenocarcinoma | CLEC18A | 0.14 | 0.18 | lasso | 5 | 0.15 | 4.5e-09 | -5.60 | -5.7 | 1.6e-08 | 0.54 | 0.06 | 0.94 | FALSE |
68 | The Cancer Genome Atlas | Colon Adenocarcinoma | EXOSC6 | 0.15 | 0.13 | lasso | 2 | 0.12 | 1.5e-07 | -5.23 | -5.1 | 2.9e-07 | 0.25 | 0.00 | 1.00 | FALSE |
69 | The Cancer Genome Atlas | Glioblastoma Multiforme | EXOSC6 | 0.18 | 0.25 | lasso | 1 | 0.23 | 1.2e-07 | -5.23 | -5.2 | 1.7e-07 | 0.22 | 0.00 | 1.00 | FALSE |
70 | The Cancer Genome Atlas | Glioblastoma Multiforme | PDXDC2 | 0.10 | 0.12 | lasso | 3 | 0.10 | 4.7e-04 | -5.60 | -5.6 | 2.1e-08 | 0.52 | 0.01 | 0.82 | FALSE |
71 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | AARS | 0.02 | 0.01 | enet | 4 | 0.01 | 5.3e-02 | -5.23 | 5.4 | 5.8e-08 | -0.16 | 0.00 | 0.62 | FALSE |
72 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CLEC18A | 0.20 | 0.12 | lasso | 3 | 0.15 | 2.7e-16 | -5.85 | -5.9 | 4.1e-09 | 0.43 | 0.03 | 0.97 | FALSE |
73 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EXOSC6 | 0.31 | 0.32 | enet | 4 | 0.30 | 3.5e-34 | -5.22 | -5.1 | 2.7e-07 | 0.22 | 0.00 | 1.00 | FALSE |
74 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AARS | 0.05 | 0.02 | enet | 6 | 0.03 | 9.8e-03 | -5.23 | 5.2 | 2.0e-07 | -0.13 | 0.00 | 0.61 | FALSE |
75 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | EXOSC6 | 0.17 | 0.17 | enet | 5 | 0.17 | 9.2e-10 | -5.23 | -5.4 | 8.6e-08 | 0.24 | 0.00 | 1.00 | FALSE |
76 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EXOSC6 | 0.16 | 0.25 | enet | 5 | 0.24 | 7.1e-27 | -5.23 | -5.2 | 2.4e-07 | 0.22 | 0.00 | 1.00 | FALSE |
77 | The Cancer Genome Atlas | Lung Adenocarcinoma | CLEC18A | 0.13 | 0.17 | enet | 11 | 0.17 | 1.8e-19 | -5.60 | -5.7 | 1.2e-08 | 0.47 | 0.05 | 0.95 | FALSE |
78 | The Cancer Genome Atlas | Lung Adenocarcinoma | EXOSC6 | 0.09 | 0.13 | enet | 5 | 0.13 | 4.2e-15 | -5.23 | -5.2 | 1.9e-07 | 0.27 | 0.00 | 1.00 | FALSE |
79 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CLEC18A | 0.06 | 0.10 | lasso | 1 | 0.09 | 6.9e-11 | -5.79 | -5.8 | 7.0e-09 | 0.52 | 0.04 | 0.96 | FALSE |
80 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CLEC18A | 0.21 | 0.08 | blup | 23 | 0.12 | 9.8e-06 | -3.09 | -5.1 | 3.0e-07 | 0.37 | 0.03 | 0.65 | FALSE |
81 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EXOSC6 | 0.43 | 0.27 | lasso | 2 | 0.26 | 1.7e-11 | -5.23 | -5.2 | 1.7e-07 | 0.22 | 0.00 | 1.00 | FALSE |
82 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CLEC18A | 0.20 | 0.14 | enet | 12 | 0.15 | 1.5e-06 | -5.79 | -5.6 | 1.8e-08 | 0.46 | 0.04 | 0.94 | FALSE |
83 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AARS | 0.03 | 0.02 | enet | 3 | 0.02 | 1.2e-03 | -5.22 | 5.2 | 1.9e-07 | -0.20 | 0.00 | 0.96 | FALSE |
84 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EXOSC6 | 0.19 | 0.23 | enet | 3 | 0.21 | 1.2e-21 | -5.23 | -5.2 | 2.2e-07 | 0.24 | 0.00 | 1.00 | FALSE |
85 | The Cancer Genome Atlas | Rectum Adenocarcinoma | CLEC18A | 0.15 | 0.03 | blup | 23 | 0.09 | 4.3e-03 | -3.09 | -6.0 | 1.7e-09 | 0.62 | 0.01 | 0.44 | FALSE |
86 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CLEC18A | 0.12 | 0.11 | lasso | 2 | 0.11 | 3.4e-07 | -5.75 | -5.8 | 9.1e-09 | 0.54 | 0.05 | 0.95 | FALSE |
87 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | CLEC18A | 0.17 | 0.09 | enet | 8 | 0.11 | 8.5e-04 | -3.09 | -5.3 | 8.7e-08 | 0.62 | 0.01 | 0.80 | FALSE |
88 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CLEC18A | 0.07 | 0.05 | blup | 23 | 0.04 | 3.7e-04 | -5.79 | -6.1 | 1.1e-09 | 0.47 | 0.04 | 0.87 | FALSE |
89 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CLEC18A | 0.20 | 0.09 | lasso | 5 | 0.08 | 8.8e-04 | -5.88 | -5.9 | 2.9e-09 | 0.70 | 0.01 | 0.90 | FALSE |
90 | The Cancer Genome Atlas | Thyroid Carcinoma | CLEC18A | 0.24 | 0.26 | blup | 23 | 0.27 | 1.3e-26 | -5.79 | -5.1 | 2.7e-07 | 0.45 | 0.03 | 0.97 | FALSE |
91 | The Cancer Genome Atlas | Thyroid Carcinoma | EXOSC6 | 0.19 | 0.25 | enet | 4 | 0.23 | 2.3e-22 | -5.22 | -5.1 | 2.9e-07 | 0.21 | 0.00 | 1.00 | FALSE |