Best TWAS P=1.67e-11 · Best GWAS P=4.38e-08 conditioned to 0.552
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | C16orf3 | 0.19 | 0.10 | enet | 17 | 0.10 | 2.7e-12 | -5.1 | -5.4 | 5.4e-08 | 0.71 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Visceral Omentum | RPL13 | 0.19 | 0.03 | lasso | 2 | 0.06 | 3.0e-04 | 4.0 | -5.2 | 2.2e-07 | 0.09 | 0.22 | 0.15 | TRUE |
3 | GTEx | Adrenal Gland | DBNDD1 | 0.45 | 0.24 | lasso | 9 | 0.28 | 1.2e-10 | -5.1 | -5.4 | 6.3e-08 | 0.66 | 0.01 | 0.99 | FALSE |
4 | GTEx | Artery Coronary | DBNDD1 | 0.28 | 0.19 | lasso | 2 | 0.13 | 3.2e-05 | -5.1 | -5.3 | 1.1e-07 | 0.73 | 0.01 | 0.98 | FALSE |
5 | GTEx | Artery Tibial | DBNDD1 | 0.31 | 0.20 | enet | 20 | 0.27 | 2.0e-21 | -5.1 | -5.9 | 4.4e-09 | 0.65 | 0.01 | 0.99 | FALSE |
6 | GTEx | Brain Cerebellum | GAS8 | 0.60 | 0.41 | lasso | 10 | 0.37 | 8.0e-12 | -5.1 | -5.1 | 2.8e-07 | 0.71 | 0.01 | 0.99 | FALSE |
7 | GTEx | Brain Cortex | GAS8 | 0.28 | 0.16 | lasso | 6 | 0.14 | 1.3e-04 | -5.1 | -5.9 | 3.9e-09 | 0.88 | 0.00 | 0.99 | FALSE |
8 | GTEx | Brain Cortex | URAHP | 0.34 | 0.19 | enet | 15 | 0.17 | 2.4e-05 | -5.1 | -5.5 | 4.9e-08 | 0.75 | 0.00 | 0.98 | FALSE |
9 | GTEx | Breast Mammary Tissue (Male) | SNORD68 | 0.12 | 0.00 | enet | 28 | 0.03 | 8.2e-02 | -4.4 | -6.5 | 1.1e-10 | 0.40 | 0.03 | 0.19 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | DBNDD1 | 0.32 | 0.20 | enet | 36 | 0.20 | 1.2e-14 | -5.1 | -6.7 | 1.7e-11 | 0.68 | 0.01 | 0.99 | TRUE |
11 | GTEx | Colon Sigmoid | DBNDD1 | 0.42 | 0.13 | lasso | 5 | 0.18 | 7.6e-07 | -5.1 | -5.6 | 2.7e-08 | 0.66 | 0.01 | 0.98 | FALSE |
12 | GTEx | Colon Transverse | DBNDD1 | 0.62 | 0.40 | enet | 40 | 0.44 | 1.2e-22 | -5.1 | -6.3 | 3.6e-10 | 0.65 | 0.01 | 0.99 | FALSE |
13 | GTEx | Esophagus Muscularis | DBNDD1 | 0.32 | 0.13 | enet | 23 | 0.14 | 1.2e-08 | -5.1 | -5.5 | 3.0e-08 | 0.55 | 0.01 | 0.99 | FALSE |
14 | GTEx | Heart Atrial Appendage | DBNDD1 | 0.52 | 0.29 | enet | 27 | 0.27 | 9.8e-13 | -5.1 | -6.6 | 3.8e-11 | 0.67 | 0.01 | 0.99 | FALSE |
15 | GTEx | Heart Left Ventricle | DBNDD1 | 0.24 | 0.18 | lasso | 4 | 0.20 | 7.6e-11 | -5.1 | -5.4 | 8.0e-08 | 0.66 | 0.01 | 0.99 | FALSE |
16 | GTEx | Lung | DBNDD1 | 0.24 | 0.14 | lasso | 6 | 0.16 | 1.7e-12 | -5.1 | -5.6 | 2.3e-08 | 0.73 | 0.01 | 0.99 | FALSE |
17 | GTEx | Nerve Tibial | DBNDD1 | 0.25 | 0.15 | lasso | 4 | 0.11 | 3.3e-08 | -5.1 | -5.2 | 2.4e-07 | 0.71 | 0.01 | 0.99 | FALSE |
18 | GTEx | Pancreas | DBNDD1 | 0.26 | 0.16 | enet | 15 | 0.18 | 5.6e-08 | -5.1 | -6.3 | 2.4e-10 | 0.58 | 0.01 | 0.98 | FALSE |
19 | GTEx | Pancreas | GAS8 | 0.19 | 0.08 | lasso | 4 | 0.06 | 1.9e-03 | 2.8 | -5.2 | 2.2e-07 | 0.37 | 0.10 | 0.62 | FALSE |
20 | GTEx | Skin Not Sun Exposed Suprapubic | DBNDD1 | 0.40 | 0.19 | lasso | 5 | 0.19 | 8.2e-11 | -5.1 | -6.1 | 1.1e-09 | 0.72 | 0.01 | 0.99 | FALSE |
21 | GTEx | Skin Not Sun Exposed Suprapubic | URAHP | 0.14 | 0.00 | enet | 13 | 0.08 | 3.1e-05 | -1.0 | -5.1 | 2.8e-07 | 0.27 | 0.05 | 0.08 | FALSE |
22 | GTEx | Thyroid | DBNDD1 | 0.26 | 0.21 | lasso | 4 | 0.20 | 1.2e-15 | -5.1 | -5.1 | 3.1e-07 | 0.70 | 0.01 | 0.99 | FALSE |
23 | The Cancer Genome Atlas | Colon Adenocarcinoma | SPG7 | 0.13 | 0.01 | blup | 59 | 0.03 | 5.8e-03 | -3.4 | -5.2 | 1.7e-07 | 0.31 | 0.00 | 0.04 | FALSE |
24 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DPEP1 | 0.08 | 0.03 | enet | 3 | 0.04 | 3.2e-05 | -4.7 | -5.5 | 4.0e-08 | 0.91 | 0.00 | 0.99 | FALSE |
25 | The Cancer Genome Atlas | Stomach Adenocarcinoma | FANCA | 0.06 | 0.00 | blup | 77 | 0.03 | 3.7e-03 | -4.9 | 5.3 | 1.3e-07 | -0.36 | 0.01 | 0.93 | FALSE |