[Hub]/) : Traits : Trunk fat-free mass : ← →

chr10:101,548,177-103,428,898

Best TWAS P=1.07e-32 · Best GWAS P=2.22e-30 conditioned to 1

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
9	GTEx	Brain Cerebellum	RP11-179B2.2	0.37	0.21	lasso	4	0.20	1.4e-06	11.5	11.9	1.1e-32	0.96	0.00	0.99	TRUE
35	GTEx	Skin Not Sun Exposed Suprapubic	HIF1AN	0.13	0.03	lasso	5	0.02	3.4e-02	-5.6	6.0	2.1e-09	0.04	0.26	0.03	TRUE
26	GTEx	Heart Left Ventricle	RP11-179B2.2	0.15	0.18	enet	2	0.14	4.8e-08	11.5	11.5	2.3e-30	1.00	0.00	1.00	FALSE
8	GTEx	Artery Tibial	RP11-179B2.2	0.11	0.09	lasso	4	0.08	8.8e-07	11.4	11.3	1.6e-29	0.96	0.00	1.00	FALSE
6	GTEx	Artery Aorta	RP11-179B2.2	0.16	0.11	lasso	2	0.09	7.6e-06	11.4	11.3	1.9e-29	0.98	0.00	1.00	FALSE
24	GTEx	Esophagus Muscularis	RP11-179B2.2	0.15	0.16	lasso	3	0.16	8.1e-10	11.2	11.2	3.5e-29	0.98	0.01	0.99	FALSE
15	GTEx	Breast Mammary Tissue (Male)	RP11-179B2.2	0.16	-0.01	enet	4	-0.01	7.1e-01	-10.8	11.0	2.2e-28	0.77	0.03	0.49	FALSE
5	GTEx	Adipose Visceral Omentum	RP11-179B2.2	0.13	0.02	lasso	3	0.03	6.5e-03	11.4	11.0	4.6e-28	0.99	0.01	0.99	FALSE
28	GTEx	Lung	RP11-179B2.2	0.18	0.12	lasso	3	0.12	1.7e-09	11.5	10.9	7.3e-28	0.99	0.00	1.00	FALSE
11	GTEx	Brain Frontal Cortex BA9	RP11-179B2.2	0.22	0.15	lasso	2	0.11	7.2e-04	11.5	10.8	3.3e-27	0.98	0.01	0.97	FALSE
13	GTEx	Breast Mammary Tissue	RP11-179B2.2	0.11	0.09	lasso	2	0.07	1.8e-04	11.4	10.7	8.4e-27	0.96	0.01	0.98	FALSE
56	The Cancer Genome Atlas	Colon Adenocarcinoma	MRPL43	0.07	0.02	blup	52	0.00	1.7e-01	10.8	-10.1	3.9e-24	-0.80	0.01	0.82	FALSE
3	GTEx	Adipose Subcutaneous	RP11-179B2.2	0.15	0.08	lasso	6	0.08	3.2e-07	9.3	10.1	4.9e-24	0.90	0.02	0.98	FALSE
44	GTEx	Thyroid	RP11-179B2.2	0.18	0.12	lasso	7	0.11	8.3e-09	9.3	10.0	9.9e-24	0.91	0.05	0.95	FALSE
36	GTEx	Skin Not Sun Exposed Suprapubic	RP11-179B2.2	0.27	0.15	enet	36	0.15	2.0e-08	11.5	9.7	4.0e-22	0.75	0.00	1.00	FALSE
61	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	SEMA4G	0.04	0.01	blup	52	0.02	1.2e-03	9.2	9.3	1.2e-20	0.83	0.01	0.75	FALSE
31	GTEx	Nerve Tibial	RP11-179B2.2	0.15	0.08	lasso	2	0.12	6.4e-09	11.2	9.0	2.1e-19	0.88	0.01	0.99	FALSE
39	GTEx	Skin Sun Exposed Lower leg	RP11-179B2.2	0.12	0.09	lasso	2	0.08	1.7e-07	9.2	8.8	1.1e-18	0.86	0.06	0.94	FALSE
65	The Cancer Genome Atlas	Brain Lower Grade Glioma	SEMA4G	0.03	0.01	blup	52	0.01	4.2e-02	11.2	8.5	2.7e-17	0.83	0.00	0.87	FALSE
71	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	FAM178A	0.14	0.08	lasso	2	0.08	5.9e-04	-9.1	-8.1	6.0e-16	-0.54	0.07	0.14	FALSE
47	METSIM	Adipose	MRPL43	0.05	0.04	bslmm	422	0.04	1.9e-06	-5.0	7.7	1.1e-14	0.46	0.90	0.07	FALSE
77	The Cancer Genome Atlas	Thyroid Carcinoma	SEMA4G	0.07	0.08	blup	52	0.08	5.1e-08	-4.6	7.6	2.9e-14	0.75	0.05	0.94	FALSE
58	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	MRPL43	0.03	0.02	blup	52	0.03	3.0e-04	-4.6	-7.2	7.5e-13	-0.68	0.10	0.50	FALSE
16	GTEx	Breast Mammary Tissue (Female)	RP11-179B2.2	0.19	0.00	lasso	3	-0.01	5.1e-01	9.3	6.9	5.3e-12	0.65	0.03	0.42	FALSE
51	ROSMAP	Brain Pre-frontal Cortex	MRPL43	0.10	0.08	bslmm	411	0.09	1.2e-11	-5.0	-6.5	8.6e-11	-0.56	1.00	0.00	FALSE
69	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	MRPL43	0.06	0.04	blup	51	0.04	7.4e-04	-4.9	-6.0	1.7e-09	-0.52	0.55	0.08	FALSE
64	The Cancer Genome Atlas	Brain Lower Grade Glioma	SEC31B	0.06	0.06	blup	51	0.06	1.1e-07	-5.4	5.8	7.5e-09	0.05	0.03	0.97	FALSE
42	GTEx	Testis	HIF1AN	0.12	0.08	lasso	3	0.06	1.6e-03	-5.8	5.8	8.9e-09	0.08	0.33	0.04	FALSE
19	GTEx	Colon Transverse	SEC31B	0.28	0.12	lasso	3	0.09	3.3e-05	-5.5	5.7	1.1e-08	0.07	0.98	0.00	FALSE
55	The Cancer Genome Atlas	Colon Adenocarcinoma	HIF1AN	0.07	0.03	blup	40	0.05	4.9e-04	-5.5	5.7	1.1e-08	0.05	0.03	0.84	FALSE
63	The Cancer Genome Atlas	Brain Lower Grade Glioma	NDUFB8	0.02	0.01	blup	38	0.01	1.6e-02	-5.0	-5.7	1.5e-08	-0.06	0.03	0.59	FALSE
46	GTEx	Whole Blood	HIF1AN	0.15	0.12	enet	7	0.12	8.7e-11	-5.7	5.6	1.7e-08	0.06	1.00	0.00	FALSE
40	GTEx	Spleen	SEC31B	0.21	0.12	lasso	3	0.05	2.3e-02	-5.5	5.6	2.0e-08	0.05	0.28	0.09	FALSE
62	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	SEC31B	0.14	0.10	lasso	7	0.10	1.6e-06	-5.6	5.6	2.1e-08	0.05	0.03	0.97	FALSE
49	NTR	Blood	HIF1AN	0.02	0.03	lasso	2	0.02	1.4e-07	-5.5	5.6	2.3e-08	0.05	1.00	0.00	FALSE
38	GTEx	Skin Sun Exposed Lower leg	HIF1AN	0.07	0.05	lasso	8	0.03	2.2e-03	-5.7	5.6	2.5e-08	0.06	0.93	0.00	FALSE
41	GTEx	Testis	SEC31B	0.11	0.11	lasso	5	0.08	2.5e-04	-5.5	5.5	3.2e-08	0.05	0.84	0.01	FALSE
1	CommonMind	Brain Pre-frontal Cortex	SEC31B	0.13	0.21	lasso	3	0.20	4.1e-24	-5.5	5.5	3.4e-08	0.05	1.00	0.00	FALSE
29	GTEx	Muscle Skeletal	HIF1AN	0.05	0.06	lasso	1	0.05	1.6e-05	-5.5	-5.5	3.4e-08	-0.06	0.94	0.00	FALSE
70	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	SEC31B	0.15	0.14	lasso	12	0.15	8.5e-07	-5.4	5.5	3.4e-08	0.06	0.04	0.96	FALSE
45	GTEx	Uterus	SEC31B	0.40	0.14	lasso	18	0.05	3.1e-02	-5.6	5.5	3.6e-08	0.02	0.36	0.04	FALSE
25	GTEx	Heart Atrial Appendage	MRPL43	0.16	0.07	lasso	4	0.09	5.8e-05	-4.6	-5.5	3.7e-08	-0.62	0.39	0.14	FALSE
60	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	SEC31B	0.05	0.05	blup	51	0.05	8.9e-07	-5.5	5.5	3.8e-08	0.06	0.03	0.97	FALSE
57	The Cancer Genome Atlas	Colon Adenocarcinoma	SEC31B	0.06	0.07	blup	51	0.08	2.9e-05	-5.0	5.5	4.0e-08	0.06	0.04	0.95	FALSE
14	GTEx	Breast Mammary Tissue (Male)	SEC31B	0.13	0.08	lasso	4	0.10	3.0e-03	-5.5	5.5	4.4e-08	0.05	0.27	0.04	FALSE
20	GTEx	Esophagus Gastroesophageal Junction	SEC31B	0.15	0.21	lasso	4	0.20	8.0e-08	-5.5	5.5	4.4e-08	0.05	0.96	0.00	FALSE
21	GTEx	Esophagus Mucosa	SEC31B	0.14	0.18	lasso	4	0.17	2.0e-11	-5.5	5.5	4.4e-08	0.05	1.00	0.00	FALSE
34	GTEx	Skin Not Sun Exposed Suprapubic	SEC31B	0.15	0.16	lasso	4	0.15	8.3e-09	-5.5	5.5	4.4e-08	0.05	0.99	0.00	FALSE
22	GTEx	Esophagus Mucosa	HIF1AN	0.14	0.08	lasso	7	0.09	2.2e-06	-5.7	5.5	4.6e-08	0.09	0.98	0.00	FALSE
2	GTEx	Adipose Subcutaneous	SEC31B	0.32	0.39	lasso	5	0.38	5.1e-33	-5.5	5.5	4.7e-08	0.05	1.00	0.00	FALSE
59	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	SEC31B	0.05	0.05	blup	51	0.05	1.3e-06	-5.5	5.5	4.7e-08	0.05	0.03	0.97	FALSE
50	NTR	Blood	SEC31B	0.03	0.03	lasso	4	0.03	1.1e-10	-5.5	5.5	4.9e-08	0.06	1.00	0.00	FALSE
4	GTEx	Adipose Visceral Omentum	SEC31B	0.18	0.28	lasso	10	0.27	1.5e-14	-5.0	5.5	5.0e-08	0.07	1.00	0.00	FALSE
23	GTEx	Esophagus Muscularis	SEC31B	0.18	0.19	lasso	4	0.20	4.5e-12	-5.5	5.5	5.1e-08	0.05	1.00	0.00	FALSE
33	GTEx	Prostate	SEC31B	0.18	0.14	lasso	2	0.12	6.7e-04	-5.4	5.5	5.1e-08	0.05	0.38	0.05	FALSE
76	The Cancer Genome Atlas	Thyroid Carcinoma	SEC31B	0.12	0.19	blup	51	0.20	1.1e-18	-5.0	5.4	6.3e-08	0.07	0.31	0.69	FALSE
30	GTEx	Nerve Tibial	SEC31B	0.42	0.42	lasso	9	0.43	1.4e-32	-5.5	5.4	6.6e-08	0.06	1.00	0.00	FALSE
37	GTEx	Skin Sun Exposed Lower leg	SEC31B	0.20	0.34	lasso	4	0.34	8.3e-29	-5.5	5.4	6.7e-08	0.06	1.00	0.00	FALSE
75	The Cancer Genome Atlas	Testicular Germ Cell Tumors	SEC31B	0.24	0.20	blup	51	0.28	1.7e-10	-5.6	5.4	7.5e-08	0.06	0.05	0.95	FALSE
12	GTEx	Breast Mammary Tissue	SEC31B	0.17	0.26	lasso	5	0.25	2.9e-13	-5.5	5.3	8.7e-08	0.05	1.00	0.00	FALSE
67	The Cancer Genome Atlas	Lung Adenocarcinoma	SEC31B	0.06	0.08	enet	10	0.09	4.6e-11	-5.5	5.3	8.9e-08	0.06	0.03	0.97	FALSE
32	GTEx	Pancreas	SEC31B	0.24	0.19	lasso	5	0.17	9.9e-08	-5.5	5.3	1.0e-07	0.06	0.97	0.00	FALSE
54	The Cancer Genome Atlas	Breast Invasive Carcinoma	SEC31B	0.09	0.13	blup	51	0.15	7.1e-29	-5.5	5.3	1.0e-07	0.05	0.04	0.96	FALSE
18	GTEx	Cells Transformed fibroblasts	SEC31B	0.14	0.19	enet	17	0.22	1.6e-16	-5.5	5.3	1.2e-07	0.06	1.00	0.00	FALSE
43	GTEx	Thyroid	SEC31B	0.28	0.32	lasso	5	0.31	4.9e-24	-5.5	5.3	1.3e-07	0.03	1.00	0.00	FALSE
10	GTEx	Brain Cortex	SEC31B	0.18	0.09	lasso	7	0.07	7.1e-03	-5.0	5.2	1.5e-07	0.07	0.40	0.03	FALSE
53	The Cancer Genome Atlas	Breast Invasive Carcinoma	MRPL43	0.02	0.02	enet	4	0.03	1.5e-06	-5.0	-5.2	1.6e-07	-0.51	0.98	0.00	FALSE
7	GTEx	Artery Tibial	SEC31B	0.25	0.32	lasso	6	0.33	1.3e-26	-5.0	5.2	1.7e-07	0.07	1.00	0.00	FALSE
52	YFS	Blood	HIF1AN	0.06	0.06	lasso	30	0.07	2.5e-22	-5.0	5.2	1.7e-07	0.07	1.00	0.00	FALSE
66	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	MRPL43	0.05	0.05	enet	9	0.05	3.0e-03	-5.0	-5.2	1.7e-07	-0.44	0.12	0.07	FALSE
27	GTEx	Lung	SEC31B	0.19	0.21	enet	18	0.20	2.0e-15	-5.0	5.2	1.9e-07	0.07	1.00	0.00	FALSE
72	The Cancer Genome Atlas	Prostate Adenocarcinoma	MRPL43	0.13	0.16	lasso	10	0.15	2.4e-15	-5.0	-5.2	1.9e-07	-0.41	1.00	0.00	FALSE
68	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	SEC31B	0.11	0.12	enet	15	0.13	1.5e-14	-5.7	5.2	2.0e-07	0.06	0.03	0.97	FALSE
74	The Cancer Genome Atlas	Stomach Adenocarcinoma	SEC31B	0.07	0.09	blup	51	0.09	4.1e-07	-5.1	5.2	2.3e-07	0.07	0.11	0.89	FALSE
73	The Cancer Genome Atlas	Stomach Adenocarcinoma	MRPL43	0.10	0.07	blup	51	0.09	3.3e-07	-5.0	-5.2	2.7e-07	-0.42	0.98	0.01	FALSE
17	GTEx	Cells EBV-transformed lymphocytes	SEC31B	0.23	0.11	enet	13	0.12	9.2e-05	-5.5	5.1	2.9e-07	0.07	0.75	0.01	FALSE
48	METSIM	Adipose	SEC31B	0.15	0.27	enet	29	0.28	1.0e-41	-5.4	5.1	3.0e-07	0.05	1.00	0.00	FALSE