Best TWAS P=3.37e-08 · Best GWAS P=9.98e-08 conditioned to 0.166
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Tibial | DDHD2 | 0.07 | 0.07 | lasso | 2 | 0.05 | 7.3e-05 | -5.2 | -5.2 | 2.4e-07 | 0.95 | 0.04 | 0.96 | FALSE |
2 | GTEx | Breast Mammary Tissue (Female) | RP11-350N15.5 | 0.12 | 0.10 | lasso | 2 | 0.07 | 3.9e-03 | -5.2 | 5.2 | 1.9e-07 | -0.96 | 0.04 | 0.81 | FALSE |
3 | GTEx | Spleen | DDHD2 | 0.17 | 0.17 | lasso | 2 | 0.11 | 7.8e-04 | -5.2 | -5.2 | 2.2e-07 | 0.95 | 0.04 | 0.88 | FALSE |
4 | GTEx | Stomach | DDHD2 | 0.13 | 0.06 | lasso | 2 | 0.06 | 1.1e-03 | -5.3 | -5.3 | 1.4e-07 | 0.98 | 0.04 | 0.90 | FALSE |
5 | NTR | Blood | BAG4 | 0.01 | 0.01 | blup | 253 | 0.01 | 3.9e-03 | -4.9 | 5.4 | 7.1e-08 | -0.93 | 0.05 | 0.92 | FALSE |
6 | ROSMAP | Brain Pre-frontal Cortex | PPAPDC1B | 0.06 | 0.08 | enet | 14 | 0.09 | 4.0e-11 | -5.2 | -5.2 | 2.6e-07 | 0.98 | 0.03 | 0.96 | FALSE |
7 | YFS | Blood | BAG4 | 0.01 | 0.01 | bslmm | 234 | 0.00 | 2.6e-02 | -4.3 | -5.5 | 4.0e-08 | 0.79 | 0.06 | 0.70 | FALSE |
8 | YFS | Blood | LSM1 | 0.02 | 0.00 | bslmm | 218 | 0.01 | 4.1e-04 | -2.3 | 5.5 | 3.4e-08 | -0.82 | 0.04 | 0.94 | TRUE |
9 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DDHD2 | 0.01 | 0.01 | blup | 21 | 0.01 | 2.3e-03 | -5.2 | -5.3 | 9.6e-08 | 0.94 | 0.01 | 0.75 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DDHD2 | 0.03 | 0.03 | blup | 21 | 0.03 | 3.5e-04 | -5.1 | -5.3 | 1.1e-07 | 0.95 | 0.02 | 0.98 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PPAPDC1B | 0.02 | 0.00 | blup | 18 | 0.01 | 4.2e-02 | -5.1 | -5.4 | 5.5e-08 | 0.94 | 0.01 | 0.53 | FALSE |
12 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DDHD2 | 0.07 | 0.05 | blup | 21 | 0.05 | 2.7e-03 | -5.1 | -5.2 | 1.9e-07 | 0.93 | 0.02 | 0.72 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | DDHD2 | 0.02 | 0.01 | blup | 21 | 0.01 | 2.4e-02 | -5.2 | -5.2 | 2.6e-07 | 0.95 | 0.01 | 0.76 | FALSE |