Best TWAS P=2.56e-10 · Best GWAS P=1.71e-09 conditioned to 0.0347
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Coronary | RP11-690I21.1 | 0.24 | -0.01 | lasso | 8 | -0.01 | 6.8e-01 | -4.9 | 5.3 | 8.6e-08 | 0.01 | 0.07 | 0.14 | TRUE |
2 | ROSMAP | Brain Pre-frontal Cortex | NCL | 0.16 | 0.05 | lasso | 6 | 0.08 | 6.1e-10 | 3.0 | 5.4 | 7.3e-08 | -0.83 | 0.01 | 0.99 | FALSE |
3 | ROSMAP | Brain Pre-frontal Cortex | LINC00471 | 0.34 | 0.26 | lasso | 10 | 0.36 | 2.1e-48 | -5.3 | 5.9 | 3.9e-09 | -0.57 | 0.10 | 0.90 | FALSE |
4 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C2orf52 | 0.15 | 0.14 | enet | 8 | 0.13 | 3.7e-11 | -5.5 | 5.9 | 4.0e-09 | -0.67 | 0.07 | 0.93 | FALSE |
5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C2orf52 | 0.19 | 0.22 | blup | 42 | 0.25 | 4.1e-50 | -5.3 | 5.8 | 8.2e-09 | -0.59 | 0.08 | 0.92 | FALSE |
6 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | C2orf52 | 0.28 | 0.12 | lasso | 6 | 0.12 | 2.0e-06 | -5.2 | 5.5 | 3.5e-08 | -0.75 | 0.04 | 0.96 | FALSE |
7 | The Cancer Genome Atlas | Colon Adenocarcinoma | C2orf52 | 0.21 | 0.16 | blup | 42 | 0.24 | 7.1e-14 | -5.3 | 6.3 | 2.6e-10 | -0.74 | 0.06 | 0.94 | TRUE |
8 | The Cancer Genome Atlas | Esophageal Carcinoma | C2orf52 | 0.16 | 0.03 | enet | 6 | 0.10 | 3.3e-04 | -3.8 | 5.6 | 1.9e-08 | -0.58 | 0.04 | 0.55 | FALSE |
9 | The Cancer Genome Atlas | Glioblastoma Multiforme | C2orf52 | 0.28 | 0.12 | enet | 12 | 0.18 | 5.0e-06 | -5.5 | 6.2 | 7.4e-10 | -0.71 | 0.03 | 0.88 | FALSE |
10 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C2orf52 | 0.18 | 0.16 | blup | 42 | 0.17 | 9.8e-19 | -5.6 | 6.0 | 2.7e-09 | -0.56 | 0.03 | 0.97 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C2orf52 | 0.23 | 0.25 | enet | 12 | 0.28 | 2.9e-32 | -5.6 | 6.2 | 7.2e-10 | -0.61 | 0.03 | 0.97 | FALSE |
12 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C2orf52 | 0.18 | 0.20 | lasso | 3 | 0.19 | 3.4e-11 | -5.3 | 5.3 | 1.0e-07 | -0.63 | 0.08 | 0.92 | FALSE |
13 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C2orf52 | 0.32 | 0.25 | blup | 42 | 0.31 | 1.5e-35 | -5.6 | 6.0 | 1.5e-09 | -0.49 | 0.03 | 0.97 | FALSE |
14 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C2orf52 | 0.13 | 0.06 | lasso | 4 | 0.05 | 2.1e-03 | -5.5 | 5.4 | 6.2e-08 | -0.61 | 0.03 | 0.53 | FALSE |
15 | The Cancer Genome Atlas | Lung Adenocarcinoma | C2orf52 | 0.18 | 0.16 | enet | 12 | 0.19 | 3.0e-21 | -5.5 | 6.3 | 2.6e-10 | -0.51 | 0.08 | 0.92 | FALSE |
16 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | C2orf52 | 0.28 | 0.18 | lasso | 4 | 0.20 | 3.7e-22 | -5.2 | 5.4 | 7.7e-08 | -0.59 | 0.08 | 0.92 | FALSE |
17 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | C2orf52 | 0.24 | 0.20 | lasso | 3 | 0.20 | 1.4e-13 | -5.3 | 5.3 | 1.3e-07 | -0.62 | 0.08 | 0.92 | FALSE |
18 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | C2orf52 | 0.32 | 0.21 | lasso | 7 | 0.21 | 3.6e-09 | -5.3 | 5.4 | 7.7e-08 | -0.61 | 0.06 | 0.94 | FALSE |
19 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | C2orf52 | 0.27 | 0.27 | lasso | 5 | 0.28 | 1.7e-11 | -5.5 | 5.8 | 8.6e-09 | -0.67 | 0.07 | 0.93 | FALSE |
20 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C2orf52 | 0.32 | 0.34 | blup | 42 | 0.39 | 9.3e-44 | -5.3 | 6.0 | 1.5e-09 | -0.64 | 0.09 | 0.91 | FALSE |
21 | The Cancer Genome Atlas | Soft Tissue Sarcoma | C2orf52 | 0.33 | 0.16 | blup | 42 | 0.21 | 2.0e-12 | -5.6 | 5.5 | 3.3e-08 | -0.36 | 0.04 | 0.96 | FALSE |
22 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | C2orf52 | 0.21 | 0.20 | lasso | 1 | 0.18 | 1.4e-05 | -5.2 | 5.2 | 2.5e-07 | -0.62 | 0.03 | 0.62 | FALSE |
23 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C2orf52 | 0.12 | 0.10 | enet | 11 | 0.12 | 5.6e-09 | -5.3 | 5.7 | 1.2e-08 | -0.67 | 0.07 | 0.93 | FALSE |
24 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | C2orf52 | 0.29 | 0.17 | enet | 10 | 0.19 | 3.2e-07 | -5.5 | 5.2 | 2.6e-07 | -0.47 | 0.07 | 0.89 | FALSE |
25 | The Cancer Genome Atlas | Thyroid Carcinoma | C2orf52 | 0.45 | 0.31 | enet | 10 | 0.35 | 4.9e-35 | -5.3 | 5.9 | 4.7e-09 | -0.57 | 0.09 | 0.91 | FALSE |