Best TWAS P=4.32e-11 · Best GWAS P=8.25e-10 conditioned to 0.0775
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CLUAP1 | 0.26 | 0.17 | enet | 24 | 0.17 | 2.9e-20 | -5.2 | -5.8 | 7.3e-09 | 0.66 | 0.20 | 0.79 | FALSE |
2 | GTEx | Adipose Subcutaneous | CLUAP1 | 0.42 | 0.32 | enet | 35 | 0.35 | 1.2e-29 | -5.2 | -6.6 | 4.3e-11 | 0.70 | 0.20 | 0.79 | TRUE |
3 | GTEx | Adipose Visceral Omentum | CLUAP1 | 0.25 | 0.17 | enet | 16 | 0.16 | 7.7e-09 | -5.2 | -5.2 | 2.2e-07 | 0.69 | 0.14 | 0.85 | FALSE |
4 | GTEx | Adrenal Gland | ZNF500 | 0.11 | 0.07 | enet | 15 | 0.01 | 9.6e-02 | 5.2 | 5.1 | 3.1e-07 | 0.04 | 0.01 | 0.90 | FALSE |
5 | GTEx | Artery Aorta | CLUAP1 | 0.40 | 0.33 | enet | 18 | 0.33 | 5.4e-19 | -5.2 | -5.9 | 4.3e-09 | 0.74 | 0.20 | 0.80 | FALSE |
6 | GTEx | Artery Tibial | CLUAP1 | 0.45 | 0.29 | enet | 47 | 0.31 | 5.2e-25 | -5.2 | -5.5 | 3.3e-08 | 0.66 | 0.20 | 0.79 | FALSE |
7 | GTEx | Brain Caudate basal ganglia | NLRC3 | 0.41 | 0.11 | lasso | 4 | 0.24 | 2.0e-07 | -5.2 | 5.3 | 1.5e-07 | -0.71 | 0.14 | 0.70 | FALSE |
8 | GTEx | Brain Cerebellar Hemisphere | NLRC3 | 0.40 | 0.39 | lasso | 2 | 0.40 | 2.1e-11 | -5.2 | 5.3 | 1.5e-07 | -0.76 | 0.02 | 0.97 | FALSE |
9 | GTEx | Brain Cerebellum | NLRC3 | 0.36 | 0.36 | lasso | 4 | 0.36 | 1.4e-11 | -5.2 | 5.4 | 6.8e-08 | -0.76 | 0.05 | 0.95 | FALSE |
10 | GTEx | Brain Cortex | NLRC3 | 0.30 | 0.34 | lasso | 1 | 0.31 | 2.3e-09 | -5.2 | 5.2 | 2.5e-07 | -0.73 | 0.06 | 0.93 | FALSE |
11 | GTEx | Brain Hippocampus | CLUAP1 | 0.37 | 0.10 | lasso | 5 | 0.09 | 4.9e-03 | -6.1 | -5.6 | 2.1e-08 | 0.89 | 0.00 | 0.97 | FALSE |
12 | GTEx | Brain Hippocampus | NLRC3 | 0.49 | 0.28 | lasso | 5 | 0.34 | 8.0e-09 | -5.2 | 5.4 | 7.8e-08 | -0.65 | 0.03 | 0.84 | FALSE |
13 | GTEx | Brain Hypothalamus | CLUAP1 | 0.47 | 0.31 | lasso | 8 | 0.32 | 3.3e-08 | -5.2 | -5.2 | 2.5e-07 | 0.73 | 0.06 | 0.78 | FALSE |
14 | GTEx | Brain Hypothalamus | NLRC3 | 0.38 | 0.15 | lasso | 6 | 0.17 | 8.3e-05 | -5.2 | 5.3 | 1.0e-07 | -0.74 | 0.05 | 0.67 | FALSE |
15 | GTEx | Colon Sigmoid | CLUAP1 | 0.47 | 0.32 | lasso | 9 | 0.34 | 1.1e-12 | -5.3 | -5.6 | 2.7e-08 | 0.78 | 0.17 | 0.82 | FALSE |
16 | GTEx | Esophagus Gastroesophageal Junction | CLUAP1 | 0.58 | 0.36 | lasso | 9 | 0.38 | 1.5e-14 | -5.2 | -5.4 | 7.0e-08 | 0.73 | 0.16 | 0.84 | FALSE |
17 | GTEx | Esophagus Gastroesophageal Junction | NLRC3 | 0.29 | 0.16 | lasso | 3 | 0.18 | 5.1e-07 | -5.2 | 5.3 | 1.2e-07 | -0.75 | 0.08 | 0.90 | FALSE |
18 | GTEx | Esophagus Mucosa | CLUAP1 | 0.30 | 0.18 | lasso | 7 | 0.19 | 1.3e-12 | -5.2 | -5.4 | 5.5e-08 | 0.75 | 0.17 | 0.83 | FALSE |
19 | GTEx | Esophagus Muscularis | CLUAP1 | 0.42 | 0.42 | lasso | 2 | 0.44 | 4.8e-29 | -5.2 | -5.4 | 7.1e-08 | 0.75 | 0.20 | 0.80 | FALSE |
20 | GTEx | Esophagus Muscularis | NLRC3 | 0.48 | 0.29 | lasso | 6 | 0.36 | 5.1e-23 | -5.2 | 5.1 | 2.8e-07 | -0.71 | 0.20 | 0.80 | FALSE |
21 | GTEx | Heart Atrial Appendage | CLUAP1 | 0.40 | 0.16 | enet | 13 | 0.29 | 2.3e-13 | -5.3 | -5.7 | 1.1e-08 | 0.79 | 0.16 | 0.84 | FALSE |
22 | GTEx | Heart Atrial Appendage | NLRC3 | 0.27 | 0.07 | lasso | 3 | 0.08 | 2.2e-04 | -5.2 | 5.6 | 1.6e-08 | -0.80 | 0.01 | 0.98 | FALSE |
23 | GTEx | Heart Atrial Appendage | NUDT16L1 | 0.12 | 0.17 | lasso | 1 | 0.17 | 4.8e-08 | 5.2 | -5.2 | 2.2e-07 | 0.02 | 0.00 | 1.00 | TRUE |
24 | GTEx | Heart Left Ventricle | CLUAP1 | 0.39 | 0.30 | lasso | 6 | 0.34 | 1.4e-18 | -5.2 | -5.5 | 3.3e-08 | 0.80 | 0.18 | 0.82 | FALSE |
25 | GTEx | Lung | CLUAP1 | 0.16 | 0.10 | enet | 9 | 0.12 | 2.1e-09 | -5.2 | -5.7 | 1.4e-08 | 0.81 | 0.18 | 0.82 | FALSE |
26 | GTEx | Lung | ZSCAN32 | 0.08 | 0.02 | lasso | 3 | 0.02 | 6.3e-03 | -4.8 | -5.7 | 1.2e-08 | 0.58 | 0.09 | 0.25 | FALSE |
27 | GTEx | Muscle Skeletal | ZNF213 | 0.17 | 0.00 | enet | 22 | 0.03 | 1.0e-03 | -3.1 | -5.5 | 3.7e-08 | 0.03 | 0.31 | 0.06 | TRUE |
28 | GTEx | Muscle Skeletal | CLUAP1 | 0.21 | 0.19 | lasso | 6 | 0.20 | 3.8e-19 | -5.2 | -5.5 | 4.1e-08 | 0.79 | 0.20 | 0.79 | FALSE |
29 | GTEx | Muscle Skeletal | NLRC3 | 0.16 | 0.11 | lasso | 2 | 0.11 | 7.9e-11 | -5.2 | 5.2 | 2.2e-07 | -0.74 | 0.19 | 0.81 | FALSE |
30 | GTEx | Nerve Tibial | CLUAP1 | 0.53 | 0.27 | lasso | 7 | 0.42 | 9.9e-32 | -5.2 | -5.2 | 1.6e-07 | 0.75 | 0.27 | 0.73 | FALSE |
31 | GTEx | Nerve Tibial | NLRC3 | 0.29 | 0.24 | lasso | 3 | 0.32 | 8.7e-23 | -5.2 | 5.2 | 2.5e-07 | -0.72 | 0.20 | 0.80 | FALSE |
32 | GTEx | Nerve Tibial | LA16c-306E5.3 | 0.19 | 0.12 | lasso | 2 | 0.10 | 2.5e-07 | -5.2 | 5.3 | 9.8e-08 | -0.77 | 0.05 | 0.95 | FALSE |
33 | GTEx | Ovary | CLUAP1 | 0.29 | 0.14 | lasso | 3 | 0.11 | 1.4e-03 | -5.2 | -5.2 | 1.6e-07 | 0.74 | 0.04 | 0.72 | FALSE |
34 | GTEx | Prostate | CLUAP1 | 0.44 | 0.36 | lasso | 3 | 0.35 | 1.1e-09 | -5.2 | -5.2 | 1.8e-07 | 0.73 | 0.14 | 0.81 | FALSE |
35 | GTEx | Skin Not Sun Exposed Suprapubic | CLUAP1 | 0.30 | 0.13 | enet | 18 | 0.23 | 8.1e-13 | -5.3 | -5.8 | 5.7e-09 | 0.70 | 0.13 | 0.87 | FALSE |
36 | GTEx | Skin Not Sun Exposed Suprapubic | NLRC3 | 0.29 | 0.16 | lasso | 6 | 0.16 | 6.2e-09 | -5.2 | 5.4 | 7.1e-08 | -0.73 | 0.14 | 0.86 | FALSE |
37 | GTEx | Skin Sun Exposed Lower leg | CLUAP1 | 0.34 | 0.25 | lasso | 6 | 0.27 | 1.1e-22 | -4.8 | -5.5 | 4.5e-08 | 0.79 | 0.61 | 0.39 | FALSE |
38 | GTEx | Skin Sun Exposed Lower leg | NLRC3 | 0.16 | 0.17 | lasso | 3 | 0.18 | 1.7e-14 | -5.3 | 5.5 | 4.3e-08 | -0.74 | 0.16 | 0.84 | FALSE |
39 | GTEx | Stomach | ZNF500 | 0.20 | 0.11 | enet | 10 | 0.08 | 1.5e-04 | 4.8 | 5.1 | 2.7e-07 | 0.00 | 0.02 | 0.96 | FALSE |
40 | GTEx | Thyroid | CLUAP1 | 0.37 | 0.17 | lasso | 6 | 0.27 | 1.1e-20 | -5.2 | -5.6 | 2.1e-08 | 0.76 | 0.19 | 0.81 | FALSE |
41 | GTEx | Thyroid | LA16c-306E5.3 | 0.11 | 0.15 | lasso | 1 | 0.15 | 1.0e-11 | -5.2 | 5.2 | 2.5e-07 | -0.73 | 0.20 | 0.80 | FALSE |
42 | GTEx | Uterus | CLUAP1 | 0.30 | 0.34 | lasso | 3 | 0.31 | 3.9e-07 | -5.3 | -5.4 | 6.6e-08 | 0.73 | 0.08 | 0.80 | FALSE |
43 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | NLRC3 | 0.05 | 0.01 | blup | 39 | 0.02 | 9.8e-03 | -5.0 | 5.2 | 2.2e-07 | -0.72 | 0.01 | 0.84 | FALSE |
44 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NLRC3 | 0.09 | 0.07 | lasso | 5 | 0.10 | 2.9e-19 | -5.2 | 5.4 | 7.7e-08 | -0.73 | 0.00 | 1.00 | FALSE |
45 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NLRC3 | 0.13 | 0.12 | blup | 39 | 0.13 | 4.9e-14 | -5.2 | 5.9 | 3.3e-09 | -0.67 | 0.00 | 0.99 | FALSE |
46 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DNASE1 | 0.09 | 0.00 | enet | 12 | 0.05 | 3.4e-06 | 2.4 | -5.2 | 2.0e-07 | 0.51 | 0.00 | 0.32 | FALSE |
47 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | NLRC3 | 0.10 | 0.04 | lasso | 2 | 0.04 | 6.2e-03 | -5.2 | 5.4 | 5.9e-08 | -0.75 | 0.01 | 0.76 | FALSE |
48 | The Cancer Genome Atlas | Lung Adenocarcinoma | NLRC3 | 0.09 | 0.08 | enet | 3 | 0.08 | 3.5e-09 | -5.2 | 5.3 | 1.1e-07 | -0.74 | 0.00 | 1.00 | FALSE |
49 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NLRC3 | 0.03 | 0.01 | lasso | 3 | 0.00 | 3.3e-01 | -4.8 | 5.7 | 1.2e-08 | -0.73 | 0.01 | 0.78 | FALSE |
50 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NLRC3 | 0.14 | 0.11 | enet | 7 | 0.14 | 2.5e-06 | -5.2 | 5.3 | 1.4e-07 | -0.74 | 0.00 | 0.98 | FALSE |
51 | The Cancer Genome Atlas | Soft Tissue Sarcoma | NLRC3 | 0.13 | 0.09 | lasso | 1 | 0.09 | 8.2e-06 | -5.2 | 5.2 | 2.5e-07 | -0.73 | 0.00 | 1.00 | FALSE |
52 | The Cancer Genome Atlas | Thyroid Carcinoma | NLRC3 | 0.31 | 0.21 | lasso | 3 | 0.26 | 8.4e-26 | -5.2 | 5.2 | 1.6e-07 | -0.71 | 0.00 | 1.00 | FALSE |