Best TWAS P=4.93e-11 · Best GWAS P=1.9e-10 conditioned to 0.481
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | STEAP1 | 0.13 | 0.12 | enet | 26 | 0.12 | 6.3e-15 | 6.2 | 5.5 | 3.7e-08 | 0.89 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Subcutaneous | STEAP2 | 0.11 | 0.06 | lasso | 5 | 0.07 | 1.1e-06 | 6.1 | -5.4 | 5.6e-08 | -0.93 | 0.02 | 0.98 | FALSE |
3 | GTEx | Artery Tibial | C7orf63 | 0.07 | 0.01 | enet | 11 | 0.03 | 1.4e-03 | 5.5 | -5.2 | 2.0e-07 | -0.76 | 0.16 | 0.76 | FALSE |
4 | GTEx | Artery Tibial | GTPBP10 | 0.18 | 0.02 | enet | 18 | 0.11 | 9.0e-09 | 5.1 | -5.4 | 8.2e-08 | -0.70 | 0.12 | 0.87 | FALSE |
5 | GTEx | Artery Tibial | STEAP2 | 0.22 | 0.24 | enet | 21 | 0.25 | 2.9e-19 | 5.5 | -5.5 | 5.0e-08 | -0.91 | 0.13 | 0.87 | FALSE |
6 | GTEx | Brain Frontal Cortex BA9 | GTPBP10 | 0.15 | 0.15 | lasso | 8 | 0.10 | 1.1e-03 | 6.1 | -5.7 | 1.2e-08 | -0.95 | 0.05 | 0.86 | FALSE |
7 | GTEx | Breast Mammary Tissue | GTPBP10 | 0.13 | 0.04 | lasso | 4 | 0.04 | 3.6e-03 | 4.7 | -5.6 | 1.9e-08 | -0.95 | 0.03 | 0.95 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | STEAP2 | 0.19 | 0.16 | enet | 14 | 0.17 | 1.5e-12 | 6.1 | -5.7 | 1.4e-08 | -0.98 | 0.02 | 0.98 | FALSE |
9 | GTEx | Esophagus Mucosa | C7orf63 | 0.11 | 0.01 | lasso | 5 | 0.00 | 5.9e-01 | 6.3 | 5.8 | 5.7e-09 | 0.95 | 0.02 | 0.95 | FALSE |
10 | GTEx | Esophagus Mucosa | STEAP1 | 0.30 | 0.42 | enet | 14 | 0.40 | 9.7e-29 | 6.2 | 6.3 | 2.6e-10 | 0.99 | 0.01 | 0.99 | FALSE |
11 | GTEx | Esophagus Muscularis | STEAP2 | 0.10 | 0.06 | enet | 16 | 0.07 | 3.4e-05 | 5.8 | -5.7 | 1.5e-08 | -0.94 | 0.02 | 0.98 | FALSE |
12 | GTEx | Muscle Skeletal | GTPBP10 | 0.07 | 0.03 | lasso | 4 | 0.04 | 9.4e-05 | 6.3 | -5.2 | 1.7e-07 | -0.94 | 0.01 | 0.99 | FALSE |
13 | GTEx | Pituitary | GTPBP10 | 0.22 | 0.01 | enet | 8 | 0.01 | 1.6e-01 | 6.4 | -6.4 | 1.4e-10 | -0.91 | 0.03 | 0.76 | FALSE |
14 | GTEx | Prostate | GTPBP10 | 0.20 | 0.00 | lasso | 6 | 0.00 | 2.4e-01 | 4.2 | -5.6 | 2.1e-08 | -0.81 | 0.08 | 0.57 | FALSE |
15 | GTEx | Skin Not Sun Exposed Suprapubic | STEAP2 | 0.12 | 0.12 | lasso | 4 | 0.13 | 9.5e-08 | 6.2 | -5.9 | 2.7e-09 | -0.98 | 0.02 | 0.98 | FALSE |
16 | METSIM | Adipose | STEAP2 | 0.07 | 0.05 | lasso | 6 | 0.06 | 8.5e-10 | 6.1 | -5.3 | 1.4e-07 | -0.91 | 0.03 | 0.97 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | STEAP2 | 0.10 | 0.10 | lasso | 4 | 0.10 | 9.5e-13 | 6.1 | -6.0 | 1.8e-09 | -0.94 | 0.03 | 0.97 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | STEAP1 | 0.01 | 0.00 | blup | 40 | 0.01 | 1.1e-02 | 6.2 | 6.3 | 2.6e-10 | 0.91 | 0.01 | 0.94 | FALSE |
19 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | STEAP1 | 0.05 | 0.05 | enet | 6 | 0.06 | 1.5e-07 | 6.2 | 6.1 | 1.3e-09 | 0.92 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | STEAP1 | 0.14 | 0.03 | enet | 7 | 0.06 | 6.0e-04 | 6.1 | -5.7 | 1.2e-08 | -0.82 | 0.01 | 0.89 | FALSE |
21 | The Cancer Genome Atlas | Lung Adenocarcinoma | STEAP1 | 0.03 | 0.04 | lasso | 2 | 0.03 | 5.6e-05 | -6.3 | 6.4 | 2.1e-10 | 0.95 | 0.01 | 0.97 | FALSE |
22 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | STEAP1 | 0.04 | 0.03 | blup | 40 | 0.03 | 1.8e-04 | 6.2 | 6.6 | 4.9e-11 | 0.93 | 0.01 | 0.98 | TRUE |
23 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | STEAP1 | 0.06 | 0.04 | blup | 40 | 0.05 | 3.7e-04 | 6.3 | 6.5 | 8.9e-11 | 0.99 | 0.01 | 0.98 | FALSE |
24 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | STEAP1 | 0.09 | 0.02 | lasso | 7 | 0.01 | 1.3e-01 | 6.2 | 6.4 | 1.9e-10 | 0.92 | 0.01 | 0.90 | FALSE |
25 | The Cancer Genome Atlas | Soft Tissue Sarcoma | GTPBP10 | 0.06 | 0.05 | enet | 4 | 0.05 | 1.1e-03 | 5.6 | -5.3 | 1.3e-07 | -0.89 | 0.00 | 0.97 | FALSE |
26 | The Cancer Genome Atlas | Thyroid Carcinoma | STEAP1 | 0.02 | 0.01 | blup | 40 | 0.01 | 1.8e-02 | 5.0 | 6.0 | 1.6e-09 | 0.80 | 0.04 | 0.58 | FALSE |