Best TWAS P=1.91e-15 · Best GWAS P=1.75e-15 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DIP2B | 0.11 | 0.10 | enet | 16 | 0.13 | 2.6e-15 | 5.7 | 6.3 | 3.3e-10 | 0.64 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | ATF1 | 0.07 | 0.05 | enet | 14 | 0.04 | 3.1e-04 | -6.1 | -5.3 | 1.4e-07 | -0.55 | 0.43 | 0.54 | FALSE |
3 | GTEx | Artery Aorta | ATF1 | 0.26 | 0.29 | lasso | 2 | 0.28 | 1.5e-15 | -6.1 | -6.1 | 9.7e-10 | -0.52 | 0.44 | 0.56 | FALSE |
4 | GTEx | Artery Coronary | ATF1 | 0.20 | 0.09 | lasso | 4 | 0.05 | 1.2e-02 | -6.1 | -5.7 | 1.1e-08 | -0.51 | 0.19 | 0.30 | FALSE |
5 | GTEx | Artery Tibial | ATF1 | 0.24 | 0.26 | lasso | 7 | 0.25 | 2.7e-19 | -6.1 | -6.0 | 1.8e-09 | -0.52 | 0.46 | 0.54 | FALSE |
6 | GTEx | Artery Tibial | RP4-605O3.4 | 0.04 | 0.01 | lasso | 4 | 0.00 | 3.2e-01 | 7.9 | 6.5 | 9.2e-11 | 0.96 | 0.02 | 0.94 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | RP4-605O3.4 | 0.18 | 0.12 | enet | 14 | 0.10 | 1.5e-03 | 8.0 | 6.6 | 5.4e-11 | 0.91 | 0.02 | 0.90 | FALSE |
8 | GTEx | Esophagus Gastroesophageal Junction | ATF1 | 0.15 | 0.15 | lasso | 4 | 0.14 | 7.8e-06 | -5.9 | -5.8 | 5.0e-09 | -0.53 | 0.43 | 0.39 | FALSE |
9 | GTEx | Esophagus Muscularis | ATF1 | 0.15 | 0.17 | lasso | 2 | 0.16 | 7.5e-10 | -6.1 | -6.1 | 1.0e-09 | -0.53 | 0.46 | 0.54 | FALSE |
10 | GTEx | Heart Atrial Appendage | CERS5 | 0.14 | 0.03 | lasso | 6 | 0.02 | 4.2e-02 | 8.0 | 6.3 | 3.4e-10 | 0.88 | 0.04 | 0.93 | FALSE |
11 | GTEx | Muscle Skeletal | DIP2B | 0.03 | 0.04 | lasso | 6 | 0.04 | 1.1e-04 | -6.1 | -5.9 | 2.9e-09 | -0.53 | 0.80 | 0.12 | FALSE |
12 | GTEx | Muscle Skeletal | ATF1 | 0.09 | 0.06 | lasso | 5 | 0.07 | 5.0e-07 | -6.1 | -6.4 | 1.5e-10 | -0.61 | 0.14 | 0.86 | FALSE |
13 | GTEx | Nerve Tibial | CERS5 | 0.31 | 0.28 | enet | 20 | 0.36 | 2.2e-26 | 8.0 | 7.2 | 6.4e-13 | 0.90 | 0.00 | 1.00 | FALSE |
14 | GTEx | Nerve Tibial | RP4-605O3.4 | 0.11 | 0.00 | lasso | 3 | 0.00 | 1.7e-01 | 7.9 | 7.0 | 3.3e-12 | 0.84 | 0.01 | 0.93 | FALSE |
15 | GTEx | Prostate | CERS5 | 0.19 | 0.08 | lasso | 4 | 0.02 | 1.2e-01 | 7.8 | 7.7 | 1.7e-14 | 0.97 | 0.02 | 0.74 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | SMARCD1 | 0.07 | 0.02 | lasso | 2 | 0.03 | 1.4e-03 | -4.7 | -5.7 | 1.0e-08 | -0.70 | 0.06 | 0.80 | FALSE |
17 | GTEx | Testis | SMARCD1 | 0.22 | 0.10 | enet | 22 | 0.10 | 2.6e-05 | 5.5 | -6.7 | 1.9e-11 | -0.85 | 0.01 | 0.98 | FALSE |
18 | GTEx | Testis | CERS5 | 0.12 | 0.06 | lasso | 6 | 0.07 | 4.0e-04 | 8.0 | 8.0 | 1.9e-15 | 0.98 | 0.01 | 0.94 | TRUE |
19 | GTEx | Thyroid | LIMA1 | 0.08 | 0.06 | enet | 18 | 0.06 | 1.7e-05 | 7.2 | 6.1 | 8.3e-10 | 0.68 | 0.15 | 0.55 | FALSE |
20 | GTEx | Thyroid | CERS5 | 0.09 | 0.04 | lasso | 9 | 0.04 | 3.7e-04 | -3.5 | 5.3 | 1.4e-07 | 0.79 | 0.08 | 0.91 | FALSE |
21 | GTEx | Whole Blood | RP4-605O3.4 | 0.04 | 0.04 | lasso | 4 | 0.01 | 1.5e-02 | 7.8 | 7.7 | 1.3e-14 | 1.00 | 0.01 | 0.97 | FALSE |
22 | YFS | Blood | ATF1 | 0.05 | 0.07 | lasso | 9 | 0.07 | 2.0e-21 | 5.2 | 5.8 | 5.1e-09 | 0.69 | 0.98 | 0.02 | FALSE |
23 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C12orf62 | 0.01 | 0.00 | blup | 47 | 0.00 | 4.6e-02 | -3.5 | -5.5 | 4.9e-08 | -0.82 | 0.02 | 0.46 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LIMA1 | 0.08 | 0.10 | blup | 59 | 0.10 | 1.8e-11 | 7.2 | -6.8 | 9.5e-12 | -0.90 | 0.30 | 0.70 | FALSE |
25 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ATF1 | 0.03 | 0.04 | lasso | 1 | 0.04 | 6.3e-05 | 5.2 | -5.2 | 1.9e-07 | -0.62 | 0.34 | 0.49 | FALSE |
26 | The Cancer Genome Atlas | Thyroid Carcinoma | C12orf62 | 0.06 | 0.02 | blup | 47 | 0.05 | 1.8e-05 | -2.7 | -5.4 | 6.1e-08 | -0.82 | 0.04 | 0.95 | FALSE |