Best TWAS P=1.22e-13 · Best GWAS P=3.35e-12 conditioned to 0.195
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | CCNT2 | 0.12 | 0.11 | lasso | 2 | 0.10 | 9.8e-13 | 5.9 | 5.9 | 4.2e-09 | 0.88 | 0.20 | 0.80 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | LOC100129961 | 0.17 | 0.14 | enet | 9 | 0.14 | 2.6e-17 | -6.9 | -7.4 | 1.2e-13 | -0.85 | 0.02 | 0.98 | TRUE |
3 | CommonMind | Brain Pre-frontal Cortex | TMEM163 | 0.05 | 0.02 | lasso | 7 | 0.01 | 5.9e-03 | 3.7 | -5.3 | 1.1e-07 | -0.77 | 0.04 | 0.87 | FALSE |
4 | GTEx | Artery Aorta | CCNT2 | 0.12 | 0.12 | lasso | 3 | 0.11 | 1.9e-06 | 5.9 | 5.9 | 3.4e-09 | 0.88 | 0.12 | 0.85 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | AC016725.4 | 0.27 | 0.18 | lasso | 4 | 0.24 | 8.3e-07 | 6.7 | -5.7 | 1.1e-08 | -0.91 | 0.05 | 0.90 | FALSE |
6 | GTEx | Esophagus Muscularis | TMEM163 | 0.09 | 0.05 | lasso | 6 | 0.05 | 4.8e-04 | 4.4 | -5.2 | 1.6e-07 | -0.51 | 0.13 | 0.84 | FALSE |
7 | GTEx | Nerve Tibial | AC016725.4 | 0.15 | 0.06 | lasso | 6 | 0.02 | 8.1e-03 | 6.7 | -6.3 | 3.4e-10 | -0.92 | 0.08 | 0.91 | FALSE |
8 | GTEx | Prostate | AC016725.4 | 0.27 | 0.03 | enet | 23 | 0.13 | 4.6e-04 | -6.3 | -6.2 | 5.0e-10 | -0.63 | 0.04 | 0.89 | FALSE |
9 | GTEx | Skin Not Sun Exposed Suprapubic | DARS | 0.15 | 0.11 | enet | 4 | 0.10 | 3.0e-06 | 5.0 | 5.4 | 7.3e-08 | 0.36 | 0.03 | 0.96 | FALSE |
10 | GTEx | Testis | CCNT2 | 0.31 | 0.26 | lasso | 6 | 0.26 | 9.3e-12 | 7.0 | 6.7 | 2.8e-11 | 0.99 | 0.01 | 0.99 | FALSE |
11 | GTEx | Testis | AC016725.4 | 0.18 | 0.09 | lasso | 6 | 0.09 | 6.3e-05 | -6.9 | 6.6 | 4.1e-11 | 0.63 | 0.03 | 0.97 | FALSE |
12 | GTEx | Thyroid | CCNT2 | 0.09 | 0.10 | lasso | 2 | 0.09 | 1.8e-07 | 6.7 | 6.6 | 3.3e-11 | 0.97 | 0.03 | 0.97 | FALSE |
13 | GTEx | Thyroid | DARS | 0.20 | 0.13 | lasso | 3 | 0.15 | 1.3e-11 | 4.9 | 5.2 | 1.7e-07 | 0.36 | 0.09 | 0.91 | FALSE |
14 | GTEx | Whole Blood | TMEM163 | 0.11 | 0.06 | lasso | 7 | 0.06 | 5.0e-06 | 4.4 | -5.7 | 1.3e-08 | -0.58 | 0.59 | 0.36 | FALSE |
15 | NTR | Blood | CCNT2 | 0.01 | 0.00 | blup | 370 | 0.00 | 6.7e-02 | 6.9 | 6.8 | 1.1e-11 | 0.70 | 0.04 | 0.86 | FALSE |
16 | NTR | Blood | MCM6 | 0.02 | 0.02 | lasso | 2 | 0.03 | 1.2e-08 | 4.0 | 5.2 | 1.9e-07 | 0.41 | 0.05 | 0.95 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | CCNT2 | 0.06 | 0.03 | enet | 27 | 0.05 | 1.6e-06 | 5.9 | 6.5 | 1.0e-10 | 0.84 | 0.23 | 0.76 | FALSE |
18 | YFS | Blood | CCNT2 | 0.01 | 0.01 | blup | 363 | 0.01 | 6.3e-05 | 5.9 | 5.4 | 7.5e-08 | 0.67 | 0.10 | 0.86 | FALSE |
19 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LCT | 0.02 | 0.02 | enet | 3 | 0.03 | 7.6e-07 | 4.4 | -5.2 | 1.9e-07 | -0.41 | 0.03 | 0.96 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ACMSD | 0.04 | 0.01 | blup | 46 | 0.02 | 2.2e-03 | 6.7 | 7.2 | 6.6e-13 | 0.89 | 0.02 | 0.87 | FALSE |
21 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DARS | 0.02 | 0.02 | lasso | 2 | 0.02 | 3.9e-03 | 5.3 | 5.3 | 1.1e-07 | 0.38 | 0.01 | 0.92 | FALSE |
22 | The Cancer Genome Atlas | Soft Tissue Sarcoma | DARS | 0.04 | 0.04 | blup | 40 | 0.04 | 1.6e-03 | 5.3 | 5.3 | 1.3e-07 | 0.38 | 0.02 | 0.92 | FALSE |