Best TWAS P=9.74e-09 · Best GWAS P=6.41e-08 conditioned to 0.0489
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | RBM6 | 0.20 | 0.28 | enet | 30 | 0.30 | 6.4e-16 | -4.9 | -5.3 | 1.1e-07 | -0.71 | 0.09 | 0.90 | FALSE |
2 | GTEx | Artery Aorta | RBM6 | 0.32 | 0.36 | lasso | 6 | 0.41 | 3.3e-24 | -4.9 | -5.1 | 2.9e-07 | -0.74 | 0.08 | 0.92 | FALSE |
3 | GTEx | Artery Aorta | APEH | 0.05 | 0.03 | enet | 8 | 0.01 | 9.1e-02 | -5.4 | -5.3 | 1.4e-07 | -0.76 | 0.06 | 0.86 | FALSE |
4 | GTEx | Artery Tibial | RBM6 | 0.24 | 0.31 | enet | 24 | 0.30 | 5.8e-24 | -4.9 | -5.1 | 2.8e-07 | -0.70 | 0.09 | 0.91 | FALSE |
5 | GTEx | Artery Tibial | UBA7 | 0.04 | 0.03 | lasso | 4 | 0.02 | 7.8e-03 | -5.3 | -5.3 | 1.4e-07 | -0.79 | 0.07 | 0.67 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | RBM6 | 0.20 | 0.14 | enet | 16 | 0.11 | 5.5e-04 | -3.7 | -5.7 | 9.7e-09 | -0.70 | 0.07 | 0.90 | TRUE |
7 | GTEx | Brain Cerebellum | RBM6 | 0.25 | 0.41 | enet | 32 | 0.33 | 2.1e-10 | -5.0 | -5.1 | 2.8e-07 | -0.71 | 0.09 | 0.91 | FALSE |
8 | GTEx | Brain Cerebellum | RNF123 | 0.36 | 0.31 | enet | 43 | 0.36 | 2.4e-11 | 3.7 | 5.1 | 2.6e-07 | 0.58 | 0.69 | 0.30 | FALSE |
9 | GTEx | Brain Cerebellum | MST1R | 0.19 | 0.24 | enet | 22 | 0.20 | 1.8e-06 | -5.4 | 5.4 | 8.6e-08 | 0.71 | 0.06 | 0.94 | FALSE |
10 | GTEx | Breast Mammary Tissue | RBM6 | 0.25 | 0.35 | enet | 26 | 0.38 | 7.4e-21 | -5.4 | -5.2 | 1.7e-07 | -0.70 | 0.06 | 0.94 | FALSE |
11 | GTEx | Breast Mammary Tissue (Female) | RBM6 | 0.23 | 0.27 | enet | 16 | 0.26 | 2.7e-08 | 4.8 | -5.2 | 2.1e-07 | -0.66 | 0.07 | 0.93 | FALSE |
12 | GTEx | Colon Sigmoid | RBM6 | 0.25 | 0.19 | enet | 7 | 0.13 | 2.3e-05 | -4.9 | -5.1 | 2.6e-07 | -0.66 | 0.09 | 0.91 | FALSE |
13 | GTEx | Esophagus Mucosa | RBM6 | 0.18 | 0.21 | enet | 18 | 0.23 | 3.0e-15 | 5.0 | -5.4 | 7.6e-08 | -0.67 | 0.10 | 0.90 | FALSE |
14 | GTEx | Esophagus Muscularis | MST1R | 0.05 | 0.00 | lasso | 5 | 0.05 | 3.6e-04 | -5.0 | 5.3 | 1.4e-07 | 0.59 | 0.09 | 0.74 | FALSE |
15 | GTEx | Heart Atrial Appendage | RBM6 | 0.34 | 0.36 | lasso | 6 | 0.35 | 1.2e-16 | -4.9 | -5.2 | 2.6e-07 | -0.70 | 0.10 | 0.89 | FALSE |
16 | GTEx | Heart Left Ventricle | RBM6 | 0.09 | 0.08 | enet | 10 | 0.11 | 3.0e-06 | -5.4 | -5.3 | 9.2e-08 | -0.74 | 0.05 | 0.95 | FALSE |
17 | GTEx | Lung | RBM6 | 0.17 | 0.20 | lasso | 6 | 0.24 | 4.6e-18 | -5.4 | -5.3 | 1.2e-07 | -0.70 | 0.08 | 0.92 | FALSE |
18 | GTEx | Muscle Skeletal | RBM6 | 0.11 | 0.15 | enet | 13 | 0.15 | 3.1e-14 | -5.4 | -5.4 | 7.2e-08 | -0.75 | 0.05 | 0.95 | FALSE |
19 | GTEx | Nerve Tibial | RBM6 | 0.41 | 0.42 | enet | 19 | 0.41 | 8.8e-31 | -4.9 | -5.2 | 1.9e-07 | -0.68 | 0.11 | 0.89 | FALSE |
20 | GTEx | Nerve Tibial | HYAL1 | 0.08 | 0.06 | enet | 14 | 0.05 | 3.6e-04 | 4.8 | 5.5 | 3.1e-08 | 0.82 | 0.11 | 0.69 | FALSE |
21 | GTEx | Pancreas | RBM6 | 0.23 | 0.20 | lasso | 4 | 0.22 | 1.3e-09 | -4.9 | -5.2 | 2.3e-07 | -0.69 | 0.06 | 0.94 | FALSE |
22 | GTEx | Pituitary | RBM6 | 0.27 | 0.21 | enet | 22 | 0.19 | 1.5e-05 | -5.2 | -5.3 | 9.8e-08 | -0.85 | 0.09 | 0.89 | FALSE |
23 | GTEx | Prostate | RBM6 | 0.14 | 0.12 | enet | 15 | 0.05 | 1.8e-02 | -5.0 | -5.3 | 1.3e-07 | -0.67 | 0.07 | 0.80 | FALSE |
24 | GTEx | Skin Sun Exposed Lower leg | RBM6 | 0.23 | 0.27 | lasso | 8 | 0.29 | 7.6e-24 | -5.0 | -5.2 | 1.7e-07 | -0.68 | 0.07 | 0.93 | FALSE |
25 | GTEx | Small Intestine Terminal Ileum | MST1R | 0.20 | 0.05 | lasso | 5 | 0.10 | 3.6e-03 | 4.8 | 5.4 | 6.4e-08 | 0.75 | 0.08 | 0.65 | FALSE |
26 | GTEx | Spleen | RBM6 | 0.36 | 0.39 | lasso | 8 | 0.40 | 2.0e-11 | -5.3 | -5.4 | 8.7e-08 | -0.75 | 0.04 | 0.96 | FALSE |
27 | GTEx | Thyroid | RBM6 | 0.25 | 0.35 | lasso | 15 | 0.36 | 1.9e-28 | -4.9 | -5.3 | 9.2e-08 | -0.73 | 0.11 | 0.89 | FALSE |
28 | NTR | Blood | RBM6 | 0.06 | 0.14 | enet | 36 | 0.13 | 7.9e-40 | -5.0 | -5.2 | 2.0e-07 | -0.73 | 0.10 | 0.90 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | SEMA3F | 0.07 | 0.11 | bslmm | 275 | 0.10 | 4.9e-13 | 5.2 | -5.3 | 1.1e-07 | -0.82 | 0.05 | 0.95 | FALSE |
30 | ROSMAP | Brain Pre-frontal Cortex | MST1R | 0.02 | 0.00 | blup | 278 | 0.01 | 4.5e-02 | 4.8 | 5.1 | 2.9e-07 | 0.62 | 0.10 | 0.86 | FALSE |
31 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | RBM6 | 0.09 | 0.13 | blup | 79 | 0.12 | 1.6e-06 | -5.2 | -5.4 | 7.1e-08 | -0.72 | 0.05 | 0.95 | FALSE |
32 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RBM6 | 0.04 | 0.05 | blup | 79 | 0.05 | 2.0e-06 | 4.8 | -5.1 | 2.7e-07 | -0.74 | 0.10 | 0.90 | FALSE |
33 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MST1R | 0.03 | 0.04 | blup | 32 | 0.05 | 4.0e-06 | 4.8 | 5.1 | 3.0e-07 | 0.69 | 0.02 | 0.98 | FALSE |
34 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SEMA3F | 0.02 | 0.04 | lasso | 3 | 0.03 | 2.3e-04 | -5.3 | -5.5 | 4.8e-08 | -0.89 | 0.01 | 0.94 | FALSE |
35 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | RBM6 | 0.09 | 0.07 | blup | 79 | 0.08 | 1.3e-04 | -5.4 | -5.3 | 1.2e-07 | -0.74 | 0.04 | 0.95 | FALSE |
36 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RBM6 | 0.06 | 0.05 | enet | 6 | 0.07 | 7.3e-04 | 3.4 | -5.1 | 2.7e-07 | -0.61 | 0.03 | 0.68 | FALSE |
37 | The Cancer Genome Atlas | Thyroid Carcinoma | MST1R | 0.03 | 0.01 | blup | 32 | 0.03 | 3.1e-04 | 5.0 | 5.1 | 2.6e-07 | 0.68 | 0.02 | 0.93 | FALSE |