Best TWAS P=1.71e-11 · Best GWAS P=1.24e-11 conditioned to 0.149
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ESYT3 | 0.04 | 0.01 | blup | 314 | 0.04 | 2.4e-05 | -5.7 | -6.2 | 5.1e-10 | 0.53 | 0.27 | 0.65 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | FAIM | 0.14 | 0.20 | lasso | 12 | 0.21 | 3.2e-25 | -5.7 | 5.7 | 9.4e-09 | -0.31 | 0.79 | 0.21 | FALSE |
3 | GTEx | Artery Aorta | MRAS | 0.52 | 0.53 | lasso | 5 | 0.54 | 2.5e-34 | -6.6 | -6.6 | 5.1e-11 | 0.95 | 0.01 | 0.99 | FALSE |
4 | GTEx | Artery Coronary | MRAS | 0.32 | 0.10 | lasso | 4 | 0.12 | 7.4e-05 | -6.5 | -6.4 | 1.2e-10 | 0.91 | 0.02 | 0.96 | FALSE |
5 | GTEx | Artery Tibial | MRAS | 0.24 | 0.20 | enet | 7 | 0.20 | 2.3e-15 | -6.6 | -6.5 | 9.4e-11 | 0.93 | 0.01 | 0.99 | FALSE |
6 | GTEx | Brain Frontal Cortex BA9 | DBR1 | 0.18 | 0.10 | lasso | 5 | 0.11 | 9.7e-04 | -6.5 | -6.7 | 1.7e-11 | 0.93 | 0.03 | 0.88 | TRUE |
7 | GTEx | Brain Frontal Cortex BA9 | FAIM | 0.10 | 0.10 | enet | 11 | 0.07 | 7.4e-03 | -5.4 | 5.5 | 5.0e-08 | -0.30 | 0.20 | 0.07 | FALSE |
8 | GTEx | Esophagus Mucosa | FAIM | 0.09 | 0.07 | enet | 9 | 0.06 | 1.1e-04 | -5.8 | 5.8 | 7.6e-09 | -0.33 | 0.72 | 0.23 | FALSE |
9 | GTEx | Muscle Skeletal | CEP70 | 0.08 | 0.06 | lasso | 5 | 0.06 | 2.1e-06 | -5.8 | -5.8 | 5.9e-09 | 0.32 | 0.66 | 0.30 | FALSE |
10 | GTEx | Muscle Skeletal | FAIM | 0.13 | 0.12 | lasso | 7 | 0.13 | 2.1e-12 | -5.6 | 6.0 | 2.5e-09 | -0.37 | 0.68 | 0.32 | FALSE |
11 | GTEx | Pancreas | FAIM | 0.13 | 0.13 | enet | 15 | 0.10 | 4.3e-05 | -5.4 | 5.5 | 4.3e-08 | -0.29 | 0.85 | 0.10 | FALSE |
12 | GTEx | Skin Not Sun Exposed Suprapubic | FAIM | 0.06 | 0.02 | lasso | 6 | 0.01 | 7.5e-02 | -4.4 | 5.6 | 2.6e-08 | -0.32 | 0.59 | 0.22 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | FAIM | 0.04 | 0.03 | lasso | 3 | 0.03 | 3.2e-03 | -5.8 | 5.8 | 6.4e-09 | -0.33 | 0.39 | 0.33 | FALSE |
14 | GTEx | Testis | MRAS | 0.20 | 0.14 | lasso | 4 | 0.11 | 1.2e-05 | -5.3 | 6.0 | 2.1e-09 | -0.64 | 0.09 | 0.86 | FALSE |
15 | GTEx | Thyroid | CEP70 | 0.17 | 0.01 | enet | 13 | 0.04 | 6.8e-04 | -5.8 | -5.2 | 2.5e-07 | 0.32 | 0.44 | 0.20 | FALSE |
16 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FAIM | 0.02 | 0.03 | enet | 6 | 0.02 | 1.3e-03 | -5.8 | 5.8 | 8.8e-09 | -0.36 | 0.01 | 0.90 | FALSE |
17 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | FAIM | 0.03 | 0.02 | blup | 42 | 0.03 | 4.0e-04 | -5.3 | 5.1 | 2.7e-07 | -0.27 | 0.02 | 0.80 | FALSE |
18 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CEP70 | 0.03 | 0.03 | enet | 15 | 0.02 | 9.0e-04 | -5.7 | -5.6 | 2.3e-08 | 0.32 | 0.02 | 0.96 | FALSE |
19 | The Cancer Genome Atlas | Brain Lower Grade Glioma | FAIM | 0.04 | 0.04 | lasso | 2 | 0.03 | 1.1e-04 | -5.8 | 5.9 | 4.7e-09 | -0.34 | 0.01 | 0.98 | FALSE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MRAS | 0.03 | 0.01 | blup | 49 | 0.01 | 9.6e-03 | -5.3 | 6.3 | 3.0e-10 | -0.69 | 0.04 | 0.63 | FALSE |
21 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | FAIM | 0.03 | 0.02 | blup | 41 | 0.03 | 3.9e-03 | 4.2 | 5.5 | 4.2e-08 | -0.33 | 0.02 | 0.72 | FALSE |
22 | The Cancer Genome Atlas | Soft Tissue Sarcoma | MRAS | 0.04 | 0.03 | blup | 49 | 0.04 | 1.8e-03 | -5.4 | -6.2 | 4.3e-10 | 0.63 | 0.07 | 0.42 | FALSE |
23 | The Cancer Genome Atlas | Thyroid Carcinoma | FAIM | 0.03 | 0.01 | blup | 41 | 0.03 | 7.1e-04 | -4.4 | 5.5 | 4.8e-08 | -0.34 | 0.03 | 0.81 | FALSE |