Best TWAS P=8.65e-11 · Best GWAS P=1.84e-09 conditioned to 1.65e-06
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | AC006111.1 | 0.18 | 0.12 | enet | 12 | 0.10 | 1.1e-05 | 3.2 | 5.2 | 1.6e-07 | 0.02 | 0.66 | 0.03 | FALSE |
2 | GTEx | Brain Cortex | AC006111.1 | 0.32 | 0.02 | enet | 16 | 0.00 | 3.2e-01 | -4.0 | 5.6 | 1.8e-08 | -0.04 | 0.04 | 0.10 | TRUE |
3 | GTEx | Heart Atrial Appendage | MGRN1 | 0.33 | 0.30 | enet | 13 | 0.32 | 7.1e-15 | -3.7 | 5.5 | 3.1e-08 | -0.19 | 0.96 | 0.02 | FALSE |
4 | GTEx | Heart Left Ventricle | MGRN1 | 0.32 | 0.10 | enet | 18 | 0.33 | 3.6e-18 | 3.8 | 6.5 | 8.6e-11 | -0.20 | 0.94 | 0.03 | TRUE |
5 | GTEx | Muscle Skeletal | MGRN1 | 0.16 | 0.06 | lasso | 7 | 0.15 | 1.1e-14 | 4.0 | 6.2 | 5.2e-10 | -0.18 | 0.94 | 0.03 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | AC006111.1 | 0.19 | 0.12 | enet | 13 | 0.18 | 2.1e-10 | -2.5 | 5.6 | 2.6e-08 | 0.02 | 0.11 | 0.88 | FALSE |
7 | METSIM | Adipose | NUDT16L1 | 0.06 | 0.03 | bslmm | 392 | 0.04 | 2.2e-06 | -3.4 | -5.7 | 1.1e-08 | 0.33 | 0.85 | 0.13 | FALSE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NAT15 | 0.05 | 0.04 | blup | 56 | 0.03 | 1.7e-07 | 4.6 | -5.8 | 7.6e-09 | -0.02 | 0.30 | 0.70 | FALSE |
9 | The Cancer Genome Atlas | Lung Adenocarcinoma | NAT15 | 0.06 | 0.04 | blup | 56 | 0.04 | 4.1e-05 | 5.6 | -5.7 | 1.0e-08 | -0.01 | 0.02 | 0.95 | FALSE |
10 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NAT15 | 0.04 | 0.01 | blup | 56 | 0.04 | 4.2e-05 | 5.2 | -5.6 | 2.3e-08 | -0.05 | 0.02 | 0.92 | FALSE |
11 | The Cancer Genome Atlas | Soft Tissue Sarcoma | NAT15 | 0.20 | 0.08 | enet | 14 | 0.17 | 1.8e-10 | 5.6 | -5.2 | 1.8e-07 | -0.01 | 0.05 | 0.94 | FALSE |
12 | The Cancer Genome Atlas | Thyroid Carcinoma | NAT15 | 0.10 | 0.05 | lasso | 6 | 0.07 | 6.1e-07 | 5.9 | -5.8 | 5.9e-09 | -0.04 | 0.01 | 0.99 | TRUE |