Best TWAS P=7.06e-10 · Best GWAS P=3.16e-09 conditioned to 0.065
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DOC2A | 0.08 | 0.01 | bslmm | 213 | 0.05 | 2.4e-06 | -4.4 | -5.2 | 1.9e-07 | 0.13 | 0.07 | 0.91 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | KAT8 | 0.06 | 0.07 | lasso | 1 | 0.07 | 3.9e-09 | -5.7 | 5.7 | 9.7e-09 | -0.69 | 0.02 | 0.98 | FALSE |
3 | CommonMind | Brain Pre-frontal Cortex | VKORC1 | 0.03 | 0.04 | lasso | 3 | 0.03 | 4.9e-05 | -5.9 | -6.0 | 2.2e-09 | 0.97 | 0.01 | 0.97 | FALSE |
4 | CommonMind | Brain Pre-frontal Cortex | ZNF646 | 0.04 | 0.06 | lasso | 7 | 0.04 | 4.5e-06 | -5.4 | 5.7 | 1.0e-08 | -0.70 | 0.08 | 0.92 | FALSE |
5 | GTEx | Adipose Subcutaneous | KAT8 | 0.19 | 0.17 | lasso | 5 | 0.25 | 4.8e-20 | 4.2 | 5.3 | 9.2e-08 | -0.54 | 0.69 | 0.31 | FALSE |
6 | GTEx | Adipose Visceral Omentum | KAT8 | 0.07 | 0.02 | lasso | 5 | 0.02 | 4.0e-02 | -5.8 | 5.6 | 2.1e-08 | -0.65 | 0.02 | 0.94 | FALSE |
7 | GTEx | Adrenal Gland | KAT8 | 0.11 | 0.06 | enet | 11 | 0.07 | 1.8e-03 | -5.6 | 5.3 | 1.2e-07 | -0.67 | 0.04 | 0.84 | FALSE |
8 | GTEx | Artery Aorta | KAT8 | 0.23 | 0.20 | lasso | 4 | 0.20 | 2.7e-11 | -5.8 | 6.0 | 2.2e-09 | -0.66 | 0.02 | 0.98 | FALSE |
9 | GTEx | Artery Coronary | KAT8 | 0.22 | 0.19 | lasso | 2 | 0.19 | 6.6e-07 | -5.8 | 5.9 | 4.5e-09 | -0.68 | 0.02 | 0.96 | FALSE |
10 | GTEx | Artery Tibial | KAT8 | 0.30 | 0.23 | lasso | 5 | 0.27 | 3.3e-21 | 4.2 | 5.6 | 2.2e-08 | -0.56 | 0.50 | 0.50 | FALSE |
11 | GTEx | Brain Cerebellar Hemisphere | KAT8 | 0.12 | 0.23 | lasso | 3 | 0.18 | 2.9e-05 | -5.8 | 5.9 | 4.8e-09 | -0.72 | 0.02 | 0.91 | FALSE |
12 | GTEx | Brain Cerebellum | KAT8 | 0.21 | 0.01 | lasso | 9 | 0.05 | 1.4e-02 | -5.8 | 6.2 | 7.1e-10 | -0.58 | 0.03 | 0.87 | TRUE |
13 | GTEx | Brain Cortex | KAT8 | 0.14 | 0.14 | lasso | 3 | 0.10 | 8.9e-04 | -4.9 | 5.5 | 3.8e-08 | -0.78 | 0.04 | 0.80 | FALSE |
14 | GTEx | Brain Frontal Cortex BA9 | KAT8 | 0.16 | 0.20 | lasso | 1 | 0.17 | 2.6e-05 | -5.8 | 5.8 | 8.9e-09 | -0.70 | 0.02 | 0.92 | FALSE |
15 | GTEx | Brain Nucleus accumbens basal ganglia | KAT8 | 0.19 | 0.13 | lasso | 4 | 0.18 | 1.4e-05 | -5.8 | 5.8 | 6.8e-09 | -0.59 | 0.02 | 0.86 | FALSE |
16 | GTEx | Breast Mammary Tissue | KAT8 | 0.23 | 0.14 | lasso | 10 | 0.17 | 4.4e-09 | -5.8 | 5.7 | 1.1e-08 | -0.61 | 0.02 | 0.98 | FALSE |
17 | GTEx | Colon Sigmoid | KAT8 | 0.20 | 0.10 | lasso | 3 | 0.14 | 1.0e-05 | -5.8 | 5.8 | 7.1e-09 | -0.59 | 0.03 | 0.91 | FALSE |
18 | GTEx | Colon Transverse | KAT8 | 0.14 | 0.12 | lasso | 6 | 0.05 | 1.4e-03 | 4.2 | 5.1 | 2.7e-07 | -0.40 | 0.15 | 0.59 | FALSE |
19 | GTEx | Esophagus Gastroesophageal Junction | KAT8 | 0.18 | 0.11 | lasso | 4 | 0.24 | 4.9e-09 | 4.2 | 5.6 | 2.4e-08 | -0.60 | 0.08 | 0.91 | FALSE |
20 | GTEx | Esophagus Mucosa | BCKDK | 0.05 | 0.05 | enet | 6 | 0.06 | 8.7e-05 | -5.4 | -5.3 | 1.0e-07 | 0.78 | 0.04 | 0.92 | FALSE |
21 | GTEx | Esophagus Mucosa | KAT8 | 0.21 | 0.15 | lasso | 4 | 0.23 | 3.5e-15 | 4.2 | 5.7 | 1.1e-08 | -0.57 | 0.10 | 0.90 | FALSE |
22 | GTEx | Esophagus Muscularis | KAT8 | 0.29 | 0.19 | lasso | 4 | 0.21 | 1.2e-12 | 4.2 | 5.5 | 4.0e-08 | -0.52 | 0.26 | 0.74 | FALSE |
23 | GTEx | Esophagus Muscularis | INO80E | 0.10 | 0.11 | enet | 20 | 0.07 | 4.6e-05 | 5.0 | -5.2 | 2.3e-07 | 0.18 | 0.02 | 0.98 | FALSE |
24 | GTEx | Liver | PRSS53 | 0.22 | 0.08 | lasso | 5 | 0.11 | 5.5e-04 | -5.6 | 5.7 | 9.4e-09 | -0.71 | 0.04 | 0.84 | FALSE |
25 | GTEx | Liver | VKORC1 | 0.22 | 0.20 | lasso | 5 | 0.22 | 1.1e-06 | -5.4 | 5.6 | 2.8e-08 | -0.72 | 0.03 | 0.96 | FALSE |
26 | GTEx | Lung | KAT8 | 0.14 | 0.08 | lasso | 3 | 0.12 | 1.7e-09 | -5.8 | 6.0 | 2.1e-09 | -0.60 | 0.03 | 0.97 | FALSE |
27 | GTEx | Nerve Tibial | KAT8 | 0.17 | 0.06 | enet | 24 | 0.08 | 3.0e-06 | 4.2 | 5.9 | 4.5e-09 | -0.61 | 0.02 | 0.97 | FALSE |
28 | GTEx | Ovary | KAT8 | 0.16 | 0.09 | lasso | 4 | 0.06 | 1.2e-02 | -5.8 | 5.9 | 2.7e-09 | -0.65 | 0.03 | 0.82 | FALSE |
29 | GTEx | Prostate | KAT8 | 0.19 | 0.09 | lasso | 3 | 0.13 | 3.8e-04 | -5.8 | 6.1 | 1.0e-09 | -0.73 | 0.03 | 0.72 | FALSE |
30 | GTEx | Skin Not Sun Exposed Suprapubic | KAT8 | 0.30 | 0.20 | enet | 15 | 0.26 | 1.9e-14 | 4.2 | 5.8 | 7.3e-09 | -0.60 | 0.05 | 0.95 | FALSE |
31 | GTEx | Skin Sun Exposed Lower leg | KAT8 | 0.31 | 0.23 | lasso | 6 | 0.35 | 2.2e-30 | -5.8 | 5.7 | 1.1e-08 | -0.59 | 0.02 | 0.98 | FALSE |
32 | GTEx | Stomach | KAT8 | 0.12 | 0.03 | lasso | 5 | 0.07 | 2.9e-04 | 4.2 | 5.6 | 1.7e-08 | -0.58 | 0.06 | 0.91 | FALSE |
33 | GTEx | Thyroid | KAT8 | 0.21 | 0.12 | lasso | 6 | 0.15 | 2.2e-11 | -5.8 | 5.9 | 4.4e-09 | -0.64 | 0.02 | 0.98 | FALSE |
34 | GTEx | Uterus | FBRS | 0.21 | 0.07 | lasso | 10 | 0.07 | 1.7e-02 | -5.4 | -5.2 | 2.5e-07 | 0.73 | 0.03 | 0.59 | FALSE |
35 | GTEx | Whole Blood | HSD3B7 | 0.06 | 0.06 | lasso | 4 | 0.06 | 2.6e-06 | -5.6 | -5.8 | 8.8e-09 | 0.72 | 0.03 | 0.97 | FALSE |
36 | GTEx | Whole Blood | ZNF668 | 0.05 | 0.06 | lasso | 3 | 0.06 | 5.9e-06 | -5.8 | -5.8 | 6.7e-09 | 0.66 | 0.02 | 0.98 | FALSE |
37 | METSIM | Adipose | KAT8 | 0.17 | 0.13 | lasso | 6 | 0.20 | 1.7e-28 | -5.8 | 5.6 | 1.7e-08 | -0.58 | 0.02 | 0.98 | FALSE |
38 | NTR | Blood | ZNF48 | 0.01 | 0.00 | blup | 196 | 0.00 | 2.2e-02 | 1.0 | -5.8 | 5.1e-09 | 0.54 | 0.04 | 0.06 | FALSE |
39 | ROSMAP | Brain Pre-frontal Cortex | KAT8 | 0.13 | 0.16 | lasso | 5 | 0.16 | 4.2e-20 | -5.8 | 6.0 | 1.8e-09 | -0.68 | 0.02 | 0.98 | FALSE |
40 | ROSMAP | Brain Pre-frontal Cortex | ZNF668 | 0.11 | 0.11 | lasso | 4 | 0.11 | 1.7e-14 | -5.4 | -5.3 | 9.3e-08 | 0.68 | 0.05 | 0.95 | FALSE |
41 | ROSMAP | Brain Pre-frontal Cortex | ZNF646 | 0.06 | 0.01 | bslmm | 233 | 0.01 | 1.1e-02 | -5.5 | 5.3 | 1.4e-07 | -0.64 | 0.04 | 0.95 | FALSE |
42 | YFS | Blood | HSD3B7 | 0.06 | 0.02 | blup | 220 | 0.03 | 8.9e-10 | -5.9 | -5.4 | 7.6e-08 | 0.52 | 0.02 | 0.98 | FALSE |
43 | YFS | Blood | PRSS36 | 0.02 | 0.02 | enet | 8 | 0.02 | 1.1e-07 | 4.2 | 5.2 | 1.7e-07 | -0.35 | 0.92 | 0.04 | FALSE |
44 | YFS | Blood | ZNF668 | 0.10 | 0.12 | bslmm | 232 | 0.12 | 1.5e-36 | -5.4 | -5.6 | 2.7e-08 | 0.69 | 0.07 | 0.93 | FALSE |
45 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MYST1 | 0.04 | 0.03 | enet | 4 | 0.03 | 1.2e-03 | 4.2 | 5.4 | 7.7e-08 | -0.50 | 0.04 | 0.76 | FALSE |
46 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FAM57B | 0.04 | 0.01 | blup | 46 | 0.03 | 2.6e-07 | 5.0 | 6.0 | 1.5e-09 | -0.14 | 0.02 | 0.98 | TRUE |
47 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MYST1 | 0.05 | 0.04 | blup | 34 | 0.08 | 2.1e-15 | 4.2 | 5.2 | 1.6e-07 | -0.54 | 0.41 | 0.59 | FALSE |
48 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | MYST1 | 0.26 | 0.01 | blup | 34 | 0.05 | 1.4e-03 | -5.7 | 6.1 | 9.2e-10 | -0.51 | 0.01 | 0.63 | FALSE |
49 | The Cancer Genome Atlas | Glioblastoma Multiforme | MYST1 | 0.18 | 0.07 | blup | 35 | 0.11 | 4.2e-04 | -5.4 | 5.2 | 2.4e-07 | -0.68 | 0.02 | 0.90 | FALSE |
50 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HSD3B7 | 0.06 | 0.01 | blup | 31 | 0.02 | 7.4e-04 | 3.5 | 5.4 | 6.9e-08 | -0.60 | 0.05 | 0.76 | FALSE |
51 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ZNF668 | 0.03 | 0.01 | lasso | 3 | 0.01 | 2.5e-02 | -5.4 | -5.5 | 4.8e-08 | 0.69 | 0.02 | 0.75 | FALSE |
52 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DOC2A | 0.03 | 0.01 | blup | 47 | 0.02 | 3.8e-03 | 4.1 | -5.3 | 9.9e-08 | 0.12 | 0.02 | 0.59 | FALSE |
53 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MYST1 | 0.12 | 0.09 | blup | 34 | 0.10 | 2.8e-11 | 4.2 | 5.3 | 1.1e-07 | -0.51 | 0.83 | 0.17 | FALSE |
54 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | VKORC1 | 0.03 | 0.04 | lasso | 3 | 0.04 | 3.2e-05 | -5.4 | 5.6 | 1.9e-08 | -0.71 | 0.02 | 0.98 | FALSE |
55 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ZNF668 | 0.02 | 0.02 | blup | 32 | 0.02 | 2.9e-03 | -5.5 | -5.7 | 9.6e-09 | 0.69 | 0.02 | 0.93 | FALSE |
56 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | MYST1 | 0.07 | 0.01 | enet | 6 | 0.04 | 1.6e-03 | -5.9 | 5.2 | 2.4e-07 | -0.60 | 0.01 | 0.88 | FALSE |
57 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C16orf93 | 0.09 | 0.09 | blup | 11 | 0.09 | 1.0e-10 | 4.0 | -5.4 | 7.5e-08 | 0.51 | 0.83 | 0.15 | FALSE |
58 | The Cancer Genome Atlas | Brain Lower Grade Glioma | INO80E | 0.07 | 0.03 | blup | 48 | 0.03 | 1.1e-04 | 4.1 | -5.2 | 1.5e-07 | 0.14 | 0.06 | 0.68 | FALSE |
59 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYST1 | 0.16 | 0.08 | blup | 34 | 0.12 | 1.5e-13 | -5.8 | 5.8 | 7.7e-09 | -0.57 | 0.01 | 0.99 | FALSE |
60 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZNF668 | 0.02 | 0.01 | enet | 8 | 0.02 | 3.1e-03 | -5.4 | -5.5 | 4.3e-08 | 0.67 | 0.02 | 0.83 | FALSE |
61 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | YPEL3 | 0.15 | 0.00 | blup | 20 | 0.05 | 2.9e-03 | 4.1 | 5.2 | 2.2e-07 | -0.11 | 0.00 | 0.02 | FALSE |
62 | The Cancer Genome Atlas | Lung Adenocarcinoma | MYST1 | 0.09 | 0.03 | blup | 33 | 0.03 | 1.4e-04 | 4.2 | 5.2 | 1.7e-07 | -0.44 | 0.13 | 0.62 | FALSE |
63 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | MYST1 | 0.03 | 0.05 | blup | 34 | 0.03 | 2.1e-03 | -5.4 | 5.7 | 1.2e-08 | -0.69 | 0.02 | 0.92 | FALSE |
64 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | MYST1 | 0.22 | 0.15 | blup | 36 | 0.21 | 2.1e-09 | -5.9 | 5.3 | 1.2e-07 | -0.59 | 0.01 | 0.99 | FALSE |
65 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MYST1 | 0.19 | 0.12 | blup | 33 | 0.18 | 1.5e-18 | -5.8 | 5.6 | 2.0e-08 | -0.60 | 0.01 | 0.99 | FALSE |
66 | The Cancer Genome Atlas | Rectum Adenocarcinoma | MYST1 | 0.13 | 0.05 | blup | 35 | 0.06 | 1.9e-02 | -5.9 | 5.9 | 3.1e-09 | -0.66 | 0.01 | 0.63 | FALSE |
67 | The Cancer Genome Atlas | Stomach Adenocarcinoma | MYST1 | 0.04 | 0.02 | blup | 35 | 0.02 | 8.7e-03 | 4.2 | 5.3 | 1.1e-07 | -0.56 | 0.02 | 0.47 | FALSE |
68 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | MYST1 | 0.13 | 0.06 | blup | 34 | 0.12 | 6.8e-05 | -5.7 | 6.1 | 1.1e-09 | -0.65 | 0.02 | 0.95 | FALSE |
69 | The Cancer Genome Atlas | Thyroid Carcinoma | DOC2A | 0.03 | 0.02 | blup | 48 | 0.03 | 6.1e-04 | 5.0 | -5.2 | 1.9e-07 | 0.14 | 0.02 | 0.84 | FALSE |
70 | The Cancer Genome Atlas | Thyroid Carcinoma | MYST1 | 0.12 | 0.10 | lasso | 3 | 0.14 | 1.1e-13 | -5.8 | 5.8 | 5.5e-09 | -0.59 | 0.01 | 0.99 | FALSE |