Best TWAS P=1.25e-08 · Best GWAS P=3.14e-07 conditioned to 0.976
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellar Hemisphere | FMNL1 | 0.27 | 0.03 | enet | 17 | 0.09 | 2.2e-03 | -5.0 | 5.7 | 1.2e-08 | -0.50 | 0.00 | 0.71 | TRUE |
2 | GTEx | Brain Cerebellum | PLEKHM1 | 0.41 | 0.44 | enet | 19 | 0.45 | 6.8e-15 | -4.8 | 5.3 | 9.9e-08 | -0.82 | 0.02 | 0.98 | FALSE |
3 | GTEx | Brain Cortex | LRRC37A4P | 0.51 | 0.38 | lasso | 12 | 0.36 | 7.0e-11 | -4.8 | 5.2 | 1.5e-07 | -0.93 | 0.01 | 0.98 | FALSE |
4 | GTEx | Breast Mammary Tissue | CRHR1 | 0.14 | 0.18 | enet | 14 | 0.20 | 2.0e-10 | -4.9 | -5.1 | 3.0e-07 | 0.93 | 0.02 | 0.98 | FALSE |
5 | GTEx | Breast Mammary Tissue (Female) | CRHR1 | 0.25 | 0.28 | lasso | 11 | 0.28 | 3.7e-09 | -4.9 | -5.2 | 1.9e-07 | 0.86 | 0.02 | 0.98 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | CRHR1-IT1 | 0.49 | 0.71 | enet | 23 | 0.71 | 2.3e-75 | -4.9 | -5.2 | 2.5e-07 | 0.89 | 0.02 | 0.98 | FALSE |
7 | GTEx | Colon Sigmoid | MAPT | 0.12 | 0.18 | enet | 18 | 0.17 | 1.1e-06 | -4.8 | 5.4 | 8.4e-08 | -0.87 | 0.02 | 0.98 | FALSE |
8 | GTEx | Esophagus Mucosa | LRRC37A4P | 0.36 | 0.26 | lasso | 8 | 0.27 | 4.0e-18 | -4.9 | 5.2 | 1.6e-07 | -0.89 | 0.02 | 0.98 | FALSE |
9 | GTEx | Muscle Skeletal | PLEKHM1 | 0.08 | 0.09 | enet | 15 | 0.09 | 7.8e-09 | -5.0 | -5.3 | 1.0e-07 | 0.97 | 0.01 | 0.99 | FALSE |
10 | GTEx | Skin Not Sun Exposed Suprapubic | LRRC37A4P | 0.45 | 0.47 | enet | 34 | 0.50 | 6.3e-31 | -4.9 | 5.7 | 1.6e-08 | -0.84 | 0.02 | 0.98 | TRUE |
11 | GTEx | Thyroid | LRRC37A4P | 0.56 | 0.56 | enet | 52 | 0.60 | 6.3e-57 | -4.9 | 5.4 | 7.7e-08 | -0.80 | 0.02 | 0.98 | FALSE |