TWAS
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Traits
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Medication: Cholesterol lowering
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chr5:73,969,058-75,594,743
Best TWAS P=3.27e-14 · Best GWAS P=1.55e-13 conditioned to 0.163
74M
74.2M
74.4M
74.6M
74.8M
75M
75.2M
75.4M
75.6M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Ovarian Serous Cystadenocarcinoma
HMGCR
0.04
0.02
enet
4
0.03
6.0e-03
7.4
7.6
3.3e-14
0.89
0.00
0.91
TRUE
2
GTEx
Esophagus Mucosa
COL4A3BP
0.09
0.06
lasso
5
0.05
4.2e-04
6.4
-6.6
5.6e-11
-0.69
0.11
0.87
FALSE
5
The Cancer Genome Atlas
Prostate Adenocarcinoma
POLK
0.03
0.01
blup
53
0.01
1.6e-02
5.0
-5.9
4.7e-09
-0.63
0.07
0.87
FALSE
1
GTEx
Brain Cerebellar Hemisphere
POLK
0.27
0.20
lasso
6
0.16
8.3e-05
5.9
5.4
8.5e-08
0.64
0.31
0.24
FALSE
3
GTEx
Thyroid
CTC-366B18.2
0.06
0.03
lasso
9
0.02
6.2e-03
5.3
5.3
1.3e-07
0.57
0.29
0.19
FALSE