Best TWAS P=1.02e-43 · Best GWAS P=1.23e-47 conditioned to NaN
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | ANKRD31 | 0.10 | 0.13 | lasso | 9 | 0.13 | 3.9e-15 | -10.2 | 9.3 | 1.0e-20 | -0.33 | 1.00 | 0.00 | FALSE |
| 2 | CommonMind | Brain Pre-frontal Cortex | POC5 | 0.17 | 0.16 | lasso | 5 | 0.15 | 5.2e-18 | -13.7 | 13.9 | 1.0e-43 | -0.90 | 0.29 | 0.71 | TRUE |
| 3 | CommonMind | Brain Pre-frontal Cortex | SV2C | 0.11 | 0.07 | bslmm | 660 | 0.07 | 4.0e-09 | -3.8 | -6.2 | 4.8e-10 | 0.32 | 1.00 | 0.00 | FALSE |
| 4 | GTEx | Adipose Subcutaneous | POC5 | 0.08 | 0.07 | lasso | 7 | 0.07 | 3.2e-06 | -8.9 | -9.1 | 8.9e-20 | 0.56 | 0.96 | 0.00 | FALSE |
| 5 | GTEx | Adipose Visceral Omentum | POC5 | 0.13 | 0.08 | lasso | 9 | 0.08 | 6.1e-05 | -9.0 | -9.1 | 1.5e-19 | 0.60 | 0.82 | 0.07 | TRUE |
| 6 | GTEx | Adrenal Gland | GCNT4 | 0.13 | 0.02 | lasso | 8 | 0.01 | 1.3e-01 | -9.5 | -11.6 | 2.6e-31 | 0.49 | 0.06 | 0.83 | TRUE |
| 7 | GTEx | Artery Tibial | GCNT4 | 0.08 | 0.07 | lasso | 2 | 0.04 | 3.9e-04 | -9.5 | 9.6 | 6.1e-22 | -0.44 | 0.68 | 0.07 | FALSE |
| 8 | GTEx | Brain Cerebellar Hemisphere | POLK | 0.27 | 0.20 | lasso | 6 | 0.16 | 8.3e-05 | -9.8 | -11.1 | 1.2e-28 | 0.64 | 0.35 | 0.14 | FALSE |
| 9 | GTEx | Brain Cerebellar Hemisphere | POC5 | 0.31 | 0.15 | enet | 18 | 0.30 | 1.6e-08 | -8.9 | -10.4 | 1.5e-25 | 0.61 | 0.61 | 0.23 | TRUE |
| 10 | GTEx | Brain Hypothalamus | CTC-366B18.4 | 0.26 | 0.12 | lasso | 8 | 0.07 | 9.0e-03 | -8.9 | 9.2 | 3.8e-20 | -0.56 | 0.10 | 0.09 | FALSE |
| 11 | GTEx | Cells EBV-transformed lymphocytes | POC5 | 0.47 | 0.36 | lasso | 4 | 0.39 | 1.3e-13 | -8.9 | -8.8 | 1.0e-18 | 0.57 | 1.00 | 0.00 | FALSE |
| 12 | GTEx | Cells Transformed fibroblasts | POLK | 0.06 | 0.04 | lasso | 3 | 0.04 | 1.0e-03 | -9.6 | 10.3 | 9.2e-25 | -0.61 | 0.25 | 0.46 | FALSE |
| 13 | GTEx | Cells Transformed fibroblasts | POC5 | 0.15 | 0.17 | lasso | 6 | 0.16 | 3.4e-12 | -9.0 | -9.0 | 2.2e-19 | 0.57 | 1.00 | 0.00 | FALSE |
| 14 | GTEx | Colon Transverse | POC5 | 0.23 | 0.16 | lasso | 4 | 0.18 | 6.0e-09 | -9.0 | -6.7 | 2.9e-11 | 0.39 | 0.96 | 0.00 | FALSE |
| 15 | GTEx | Esophagus Mucosa | COL4A3BP | 0.09 | 0.06 | lasso | 5 | 0.05 | 4.2e-04 | -7.6 | 9.6 | 1.1e-21 | -0.51 | 0.80 | 0.04 | FALSE |
| 16 | GTEx | Esophagus Mucosa | POC5 | 0.18 | 0.16 | lasso | 1 | 0.15 | 4.8e-10 | -9.0 | -9.0 | 2.2e-19 | 0.57 | 1.00 | 0.00 | FALSE |
| 17 | GTEx | Lung | POC5 | 0.18 | 0.09 | enet | 46 | 0.09 | 2.5e-07 | -8.9 | -5.4 | 6.1e-08 | 0.24 | 0.98 | 0.00 | TRUE |
| 18 | GTEx | Nerve Tibial | POC5 | 0.16 | 0.12 | lasso | 5 | 0.10 | 7.6e-08 | -9.0 | -9.0 | 1.7e-19 | 0.57 | 0.99 | 0.00 | FALSE |
| 19 | GTEx | Pancreas | POC5 | 0.32 | 0.23 | lasso | 3 | 0.21 | 3.5e-09 | -9.0 | -9.1 | 6.1e-20 | 0.57 | 1.00 | 0.00 | FALSE |
| 20 | GTEx | Spleen | POLK | 0.18 | -0.01 | lasso | 16 | 0.03 | 5.1e-02 | -7.2 | -12.2 | 4.4e-34 | 0.59 | 0.17 | 0.19 | FALSE |
| 21 | GTEx | Spleen | POC5 | 0.42 | 0.37 | lasso | 4 | 0.34 | 1.3e-09 | -8.9 | -9.1 | 1.3e-19 | 0.57 | 0.95 | 0.03 | FALSE |
| 22 | GTEx | Spleen | CTC-366B18.2 | 0.16 | 0.11 | lasso | 3 | 0.14 | 2.2e-04 | -8.9 | -11.3 | 2.0e-29 | 0.72 | 0.18 | 0.34 | TRUE |
| 23 | GTEx | Stomach | POC5 | 0.10 | 0.06 | enet | 12 | 0.08 | 8.3e-05 | -9.6 | -7.5 | 6.0e-14 | 0.43 | 0.56 | 0.02 | FALSE |
| 24 | GTEx | Testis | POC5 | 0.27 | 0.13 | lasso | 8 | 0.09 | 8.1e-05 | -9.8 | 9.4 | 5.5e-21 | -0.65 | 0.60 | 0.19 | FALSE |
| 25 | GTEx | Testis | GCNT4 | 0.42 | 0.35 | enet | 62 | 0.37 | 3.8e-17 | -10.0 | -10.9 | 1.1e-27 | 0.50 | 1.00 | 0.00 | FALSE |
| 26 | GTEx | Thyroid | POC5 | 0.26 | 0.23 | enet | 15 | 0.23 | 1.8e-17 | -9.0 | -7.8 | 4.1e-15 | 0.49 | 1.00 | 0.00 | FALSE |
| 27 | GTEx | Thyroid | CTC-366B18.2 | 0.06 | 0.03 | lasso | 9 | 0.02 | 6.2e-03 | -11.1 | -11.0 | 3.5e-28 | 0.62 | 0.32 | 0.13 | FALSE |
| 28 | METSIM | Adipose | POC5 | 0.11 | 0.09 | enet | 29 | 0.10 | 7.5e-15 | -9.0 | -7.5 | 4.9e-14 | 0.48 | 1.00 | 0.00 | FALSE |
| 29 | METSIM | Adipose | POLK | 0.05 | 0.01 | enet | 16 | 0.03 | 4.3e-05 | -12.3 | -12.0 | 2.0e-33 | 0.58 | 0.97 | 0.02 | FALSE |
| 30 | ROSMAP | Brain Pre-frontal Cortex | POLK | 0.03 | 0.01 | lasso | 7 | 0.02 | 3.9e-03 | -11.4 | -13.0 | 1.7e-38 | 0.81 | 0.27 | 0.63 | FALSE |
| 31 | ROSMAP | Brain Pre-frontal Cortex | POC5 | 0.05 | 0.00 | blup | 384 | 0.02 | 8.6e-04 | -9.0 | -9.4 | 4.6e-21 | 0.57 | 0.30 | 0.13 | TRUE |
| 32 | ROSMAP | Brain Pre-frontal Cortex | ANKDD1B | 0.07 | 0.00 | bslmm | 382 | 0.03 | 7.0e-05 | -7.5 | 11.6 | 3.9e-31 | -0.63 | 0.08 | 0.54 | FALSE |
| 33 | The Cancer Genome Atlas | Colon Adenocarcinoma | GCNT4 | 0.10 | 0.06 | enet | 6 | 0.05 | 8.7e-04 | -5.0 | 8.9 | 4.3e-19 | -0.41 | 0.08 | 0.52 | FALSE |
| 34 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | GCNT4 | 0.17 | 0.00 | blup | 50 | 0.05 | 1.5e-06 | -7.5 | -5.8 | 7.1e-09 | 0.27 | 0.01 | 0.03 | TRUE |
| 35 | The Cancer Genome Atlas | Brain Lower Grade Glioma | POC5 | 0.04 | 0.00 | enet | 7 | 0.03 | 2.1e-04 | -13.7 | 11.0 | 5.5e-28 | -0.77 | 0.02 | 0.57 | FALSE |
| 36 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | HMGCR | 0.04 | 0.02 | enet | 4 | 0.03 | 6.0e-03 | -10.4 | -10.9 | 9.2e-28 | 0.57 | 0.02 | 0.72 | FALSE |
| 37 | The Cancer Genome Atlas | Prostate Adenocarcinoma | POLK | 0.03 | 0.01 | blup | 53 | 0.01 | 1.6e-02 | -7.9 | 10.5 | 7.6e-26 | -0.57 | 0.32 | 0.43 | FALSE |
| 38 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | POC5 | 0.24 | 0.13 | blup | 70 | 0.14 | 1.2e-04 | -10.5 | -10.1 | 5.4e-24 | 0.73 | 0.05 | 0.80 | FALSE |