TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Cardiovascular Disease
:
←
→
chr21:44,392,270-45,879,403
Best TWAS P=1.68e-07 · Best GWAS P=4.6e-10 conditioned to 1.2e-08
44.4M
44.6M
44.8M
45M
45.2M
45.4M
45.6M
45.8M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Artery Aorta
PDXK
0.14
0.11
lasso
3
0.12
6.2e-07
-5.2
-5.2
1.7e-07
-0.11
0.07
0.93
TRUE
4
The Cancer Genome Atlas
Pheochromocytoma and Paraganglioma
HSF2BP
0.16
-0.01
blup
62
0.02
4.7e-02
1.3
5.2
1.9e-07
0.13
0.01
0.20
FALSE
1
CommonMind
Brain Pre-frontal Cortex
RRP1B
0.11
0.09
lasso
11
0.11
3.7e-13
-4.6
-5.2
2.1e-07
-0.13
0.23
0.77
FALSE
3
GTEx
Vagina
PDXK
0.23
0.19
lasso
1
0.23
5.2e-06
-5.2
-5.2
2.1e-07
-0.13
0.09
0.86
FALSE