Best TWAS P=7.48e-09 · Best GWAS P=5.24e-08 conditioned to 0.712
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOC4 | 0.19 | 0.23 | lasso | 4 | 0.24 | 2.2e-28 | -5.1 | 5.1 | 2.7e-07 | 0.00 | 0.05 | 0.95 | FALSE |
2 | GTEx | Adipose Subcutaneous | EXOC4 | 0.13 | 0.05 | enet | 15 | 0.04 | 5.8e-04 | -5.1 | 5.8 | 7.5e-09 | -0.13 | 0.06 | 0.89 | TRUE |
3 | GTEx | Artery Aorta | EXOC4 | 0.20 | 0.14 | enet | 21 | 0.20 | 5.6e-11 | -5.2 | 5.6 | 2.6e-08 | -0.04 | 0.05 | 0.94 | FALSE |
4 | GTEx | Breast Mammary Tissue | EXOC4 | 0.14 | 0.10 | lasso | 5 | 0.10 | 1.3e-05 | -5.2 | 5.3 | 8.9e-08 | -0.07 | 0.05 | 0.94 | FALSE |
5 | GTEx | Esophagus Mucosa | EXOC4 | 0.22 | 0.13 | enet | 25 | 0.18 | 2.0e-12 | -5.2 | 5.3 | 1.1e-07 | -0.20 | 0.05 | 0.95 | FALSE |
6 | GTEx | Esophagus Muscularis | EXOC4 | 0.22 | 0.13 | lasso | 4 | 0.14 | 8.8e-09 | -5.2 | 5.2 | 1.8e-07 | 0.00 | 0.05 | 0.95 | FALSE |
7 | GTEx | Heart Left Ventricle | AKR1B1 | 0.25 | 0.08 | lasso | 7 | 0.05 | 8.5e-04 | -5.4 | 5.4 | 6.7e-08 | -0.90 | 0.02 | 0.98 | FALSE |
8 | GTEx | Skin Not Sun Exposed Suprapubic | EXOC4 | 0.16 | 0.11 | lasso | 3 | 0.09 | 7.2e-06 | -5.2 | 5.2 | 2.2e-07 | -0.01 | 0.06 | 0.93 | FALSE |
9 | GTEx | Testis | EXOC4 | 0.53 | 0.24 | lasso | 11 | 0.30 | 7.3e-14 | -5.1 | 5.2 | 2.1e-07 | 0.05 | 0.06 | 0.93 | FALSE |
10 | METSIM | Adipose | EXOC4 | 0.06 | 0.06 | lasso | 6 | 0.05 | 6.2e-08 | -5.2 | 5.2 | 2.1e-07 | 0.00 | 0.06 | 0.94 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | EXOC4 | 0.14 | 0.15 | bslmm | 609 | 0.16 | 4.4e-20 | -5.2 | 5.4 | 7.8e-08 | -0.01 | 0.05 | 0.95 | FALSE |
12 | The Cancer Genome Atlas | Colon Adenocarcinoma | AKR1B15 | 0.10 | 0.12 | lasso | 2 | 0.12 | 2.0e-07 | -5.3 | -5.3 | 1.2e-07 | 0.93 | 0.02 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | AKR1B15 | 0.07 | 0.08 | lasso | 2 | 0.08 | 2.3e-05 | -5.3 | -5.3 | 1.2e-07 | 0.93 | 0.02 | 0.97 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | EXOC4 | 0.10 | 0.05 | lasso | 4 | 0.05 | 7.3e-04 | -5.2 | 5.2 | 1.6e-07 | -0.01 | 0.02 | 0.96 | FALSE |
15 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | AKR1B15 | 0.18 | 0.12 | blup | 64 | 0.14 | 4.5e-07 | -5.3 | -5.5 | 4.0e-08 | 0.88 | 0.02 | 0.98 | TRUE |
16 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | AKR1B15 | 0.07 | 0.05 | blup | 66 | 0.06 | 4.5e-07 | -5.3 | -5.4 | 8.0e-08 | 0.91 | 0.01 | 0.99 | FALSE |
17 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | AKR1B15 | 0.31 | 0.22 | lasso | 2 | 0.20 | 7.7e-09 | -5.3 | -5.2 | 2.3e-07 | 0.93 | 0.02 | 0.98 | FALSE |
18 | The Cancer Genome Atlas | Rectum Adenocarcinoma | AKR1B15 | 0.37 | 0.21 | lasso | 3 | 0.21 | 1.2e-05 | -5.3 | -5.5 | 4.9e-08 | 0.94 | 0.01 | 0.94 | FALSE |
19 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | AKR1B10 | 0.11 | 0.14 | lasso | 1 | 0.13 | 2.4e-05 | -5.3 | -5.3 | 1.2e-07 | 0.91 | 0.02 | 0.96 | FALSE |
20 | The Cancer Genome Atlas | Thyroid Carcinoma | EXOC4 | 0.17 | 0.12 | lasso | 4 | 0.11 | 1.7e-10 | -5.2 | 5.2 | 1.9e-07 | -0.01 | 0.02 | 0.98 | FALSE |