Best TWAS P=2.94e-11 · Best GWAS P=2.22e-10 conditioned to 0.269
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ATP13A2 | 0.08 | 0.06 | lasso | 5 | 0.08 | 6.9e-10 | 4.0 | 5.4 | 6.5e-08 | -0.85 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Subcutaneous | CROCC | 0.18 | 0.15 | enet | 24 | 0.19 | 2.9e-15 | -5.3 | -5.5 | 4.5e-08 | 0.87 | 0.29 | 0.71 | FALSE |
3 | GTEx | Adipose Subcutaneous | MST1L | 0.12 | 0.14 | lasso | 4 | 0.11 | 2.0e-09 | -5.8 | -5.7 | 1.6e-08 | 0.84 | 0.03 | 0.97 | FALSE |
4 | GTEx | Adipose Visceral Omentum | CROCC | 0.17 | 0.12 | lasso | 5 | 0.17 | 3.6e-09 | -5.3 | -5.4 | 6.8e-08 | 0.93 | 0.06 | 0.94 | FALSE |
5 | GTEx | Adipose Visceral Omentum | MST1L | 0.15 | 0.08 | enet | 21 | 0.11 | 1.7e-06 | 3.9 | -5.5 | 3.6e-08 | 0.81 | 0.10 | 0.90 | FALSE |
6 | GTEx | Adrenal Gland | CROCC | 0.16 | 0.00 | lasso | 3 | 0.00 | 2.1e-01 | -5.8 | -5.5 | 3.1e-08 | 0.80 | 0.04 | 0.53 | FALSE |
7 | GTEx | Artery Aorta | CROCC | 0.20 | 0.18 | enet | 23 | 0.20 | 4.0e-11 | -5.8 | -5.7 | 1.1e-08 | 0.84 | 0.01 | 0.99 | FALSE |
8 | GTEx | Artery Aorta | MST1L | 0.23 | 0.16 | enet | 23 | 0.19 | 7.0e-11 | -5.3 | -5.8 | 5.1e-09 | 0.84 | 0.02 | 0.98 | FALSE |
9 | GTEx | Artery Tibial | MST1L | 0.21 | 0.08 | lasso | 6 | 0.12 | 5.0e-10 | -5.3 | -5.4 | 5.9e-08 | 0.88 | 0.13 | 0.87 | FALSE |
10 | GTEx | Brain Cerebellum | CROCC | 0.30 | 0.25 | lasso | 3 | 0.23 | 2.0e-07 | -5.8 | -5.9 | 4.2e-09 | 0.87 | 0.02 | 0.97 | FALSE |
11 | GTEx | Brain Cerebellum | RP11-108M9.5 | 0.28 | 0.22 | lasso | 4 | 0.20 | 1.7e-06 | -5.8 | -5.3 | 9.8e-08 | 0.85 | 0.02 | 0.89 | FALSE |
12 | GTEx | Breast Mammary Tissue | CROCC | 0.36 | 0.23 | lasso | 6 | 0.24 | 8.7e-13 | -5.8 | -5.5 | 3.0e-08 | 0.89 | 0.03 | 0.97 | FALSE |
13 | GTEx | Breast Mammary Tissue | MST1L | 0.23 | 0.14 | lasso | 4 | 0.12 | 8.6e-07 | -5.8 | -5.5 | 3.3e-08 | 0.91 | 0.03 | 0.96 | FALSE |
14 | GTEx | Breast Mammary Tissue (Female) | MST1L | 0.02 | 0.04 | lasso | 1 | 0.06 | 9.2e-03 | -5.8 | -5.8 | 7.0e-09 | 0.87 | 0.02 | 0.39 | FALSE |
15 | GTEx | Cells Transformed fibroblasts | CROCC | 0.27 | 0.11 | lasso | 11 | 0.16 | 7.3e-12 | -5.8 | -5.2 | 1.6e-07 | 0.84 | 0.03 | 0.97 | FALSE |
16 | GTEx | Cells Transformed fibroblasts | MFAP2 | 0.29 | 0.39 | enet | 6 | 0.42 | 1.3e-33 | -6.3 | 5.8 | 5.2e-09 | -0.97 | 0.00 | 1.00 | FALSE |
17 | GTEx | Cells Transformed fibroblasts | MST1L | 0.09 | 0.02 | enet | 12 | 0.03 | 3.1e-03 | -5.8 | -5.7 | 1.6e-08 | 0.82 | 0.06 | 0.85 | FALSE |
18 | GTEx | Colon Transverse | CROCC | 0.20 | 0.14 | lasso | 2 | 0.14 | 2.2e-07 | -5.8 | -5.6 | 2.8e-08 | 0.87 | 0.03 | 0.97 | FALSE |
19 | GTEx | Esophagus Gastroesophageal Junction | CROCC | 0.21 | 0.10 | enet | 12 | 0.09 | 5.2e-04 | -5.3 | -5.2 | 2.4e-07 | 0.83 | 0.01 | 0.98 | FALSE |
20 | GTEx | Esophagus Mucosa | CROCC | 0.14 | 0.08 | enet | 18 | 0.14 | 9.5e-10 | -5.0 | -5.2 | 1.8e-07 | 0.76 | 0.17 | 0.83 | FALSE |
21 | GTEx | Esophagus Mucosa | RP11-108M9.5 | 0.28 | 0.26 | lasso | 7 | 0.31 | 2.9e-21 | -5.8 | -5.5 | 2.9e-08 | 0.83 | 0.03 | 0.97 | FALSE |
22 | GTEx | Esophagus Muscularis | CROCC | 0.20 | 0.18 | lasso | 6 | 0.16 | 7.1e-10 | -5.8 | -5.9 | 4.7e-09 | 0.88 | 0.03 | 0.97 | FALSE |
23 | GTEx | Heart Atrial Appendage | CROCC | 0.13 | 0.10 | enet | 11 | 0.13 | 1.5e-06 | -5.8 | -6.0 | 2.3e-09 | 0.84 | 0.02 | 0.98 | FALSE |
24 | GTEx | Heart Left Ventricle | MST1L | 0.09 | 0.07 | lasso | 4 | 0.07 | 1.1e-04 | -5.8 | -5.8 | 6.3e-09 | 0.85 | 0.05 | 0.91 | FALSE |
25 | GTEx | Lung | MFAP2 | 0.09 | 0.08 | enet | 19 | 0.06 | 1.3e-05 | -4.7 | 5.5 | 3.8e-08 | -0.71 | 0.15 | 0.84 | FALSE |
26 | GTEx | Lung | RP4-798A10.7 | 0.11 | 0.05 | lasso | 4 | 0.02 | 1.0e-02 | -5.3 | -5.3 | 1.3e-07 | 0.95 | 0.00 | 0.99 | FALSE |
27 | GTEx | Muscle Skeletal | MST1L | 0.17 | 0.12 | lasso | 9 | 0.15 | 3.5e-14 | -5.8 | -5.9 | 3.3e-09 | 0.93 | 0.04 | 0.96 | FALSE |
28 | GTEx | Nerve Tibial | CROCC | 0.19 | 0.15 | enet | 8 | 0.19 | 2.4e-13 | -5.8 | -5.8 | 8.7e-09 | 0.94 | 0.03 | 0.97 | FALSE |
29 | GTEx | Nerve Tibial | MFAP2 | 0.09 | 0.06 | lasso | 3 | 0.07 | 9.7e-06 | 3.9 | 5.2 | 1.7e-07 | -0.75 | 0.09 | 0.90 | FALSE |
30 | GTEx | Nerve Tibial | ATP13A2 | 0.05 | 0.03 | lasso | 5 | 0.03 | 4.8e-03 | -5.1 | 5.4 | 5.7e-08 | -0.67 | 0.23 | 0.64 | FALSE |
31 | GTEx | Nerve Tibial | MST1L | 0.23 | 0.16 | lasso | 7 | 0.22 | 6.6e-16 | -5.8 | -6.0 | 1.8e-09 | 0.86 | 0.03 | 0.97 | FALSE |
32 | GTEx | Ovary | RP11-108M9.5 | 0.32 | 0.14 | lasso | 6 | 0.09 | 2.9e-03 | -5.8 | -6.7 | 2.9e-11 | 0.87 | 0.02 | 0.86 | TRUE |
33 | GTEx | Skin Not Sun Exposed Suprapubic | CROCC | 0.16 | 0.12 | lasso | 7 | 0.15 | 9.9e-09 | -3.8 | -5.2 | 1.6e-07 | 0.90 | 0.02 | 0.98 | FALSE |
34 | GTEx | Skin Not Sun Exposed Suprapubic | MST1L | 0.15 | 0.15 | lasso | 4 | 0.13 | 8.2e-08 | -5.8 | -5.7 | 1.4e-08 | 0.84 | 0.05 | 0.95 | FALSE |
35 | GTEx | Skin Sun Exposed Lower leg | CROCC | 0.19 | 0.13 | enet | 30 | 0.21 | 3.4e-17 | -5.8 | -5.6 | 2.6e-08 | 0.79 | 0.02 | 0.98 | FALSE |
36 | GTEx | Skin Sun Exposed Lower leg | NBPF1 | 0.14 | 0.04 | lasso | 7 | 0.05 | 2.9e-05 | -5.3 | -5.8 | 7.1e-09 | 0.85 | 0.26 | 0.74 | FALSE |
37 | GTEx | Small Intestine Terminal Ileum | CROCC | 0.32 | 0.07 | lasso | 14 | 0.18 | 7.9e-05 | -5.8 | -6.4 | 1.2e-10 | 0.85 | 0.06 | 0.33 | FALSE |
38 | GTEx | Testis | NBPF1 | 0.12 | -0.01 | enet | 11 | 0.00 | 6.1e-01 | -5.5 | -5.4 | 5.7e-08 | 0.62 | 0.06 | 0.22 | FALSE |
39 | GTEx | Thyroid | CROCC | 0.28 | 0.12 | lasso | 8 | 0.25 | 3.5e-19 | -4.7 | -5.7 | 1.3e-08 | 0.72 | 0.64 | 0.36 | FALSE |
40 | GTEx | Thyroid | MST1L | 0.08 | 0.03 | lasso | 11 | 0.03 | 1.8e-03 | -4.7 | -6.1 | 1.1e-09 | 0.71 | 0.08 | 0.69 | FALSE |
41 | GTEx | Whole Blood | CROCC | 0.07 | 0.09 | lasso | 2 | 0.06 | 2.1e-06 | -5.8 | -5.8 | 8.1e-09 | 0.87 | 0.02 | 0.98 | FALSE |
42 | GTEx | Whole Blood | MST1P2 | 0.05 | 0.02 | enet | 14 | 0.04 | 1.8e-04 | -6.3 | 5.6 | 1.9e-08 | -0.68 | 0.01 | 0.98 | FALSE |
43 | METSIM | Adipose | CROCC | 0.16 | 0.12 | lasso | 3 | 0.14 | 1.7e-20 | -3.8 | -5.2 | 2.5e-07 | 0.90 | 0.13 | 0.87 | FALSE |
44 | NTR | Blood | CROCC | 0.03 | 0.03 | lasso | 5 | 0.03 | 8.8e-09 | -5.8 | -5.8 | 7.1e-09 | 0.86 | 0.02 | 0.98 | FALSE |
45 | YFS | Blood | CROCC | 0.02 | 0.02 | lasso | 5 | 0.01 | 2.1e-05 | -5.8 | -5.5 | 4.5e-08 | 0.91 | 0.05 | 0.95 | FALSE |
46 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CROCC | 0.09 | 0.04 | lasso | 4 | 0.06 | 1.3e-05 | -5.8 | -5.5 | 3.8e-08 | 0.86 | 0.01 | 0.98 | FALSE |
47 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CROCC | 0.02 | 0.01 | enet | 12 | 0.02 | 5.6e-03 | -5.4 | -5.1 | 2.8e-07 | 0.86 | 0.01 | 0.90 | FALSE |
48 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MFAP2 | 0.17 | 0.22 | enet | 10 | 0.23 | 6.8e-26 | -4.6 | 5.3 | 1.3e-07 | -0.76 | 0.94 | 0.06 | FALSE |
49 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ATP13A2 | 0.05 | 0.05 | lasso | 3 | 0.07 | 2.6e-08 | -5.3 | 5.8 | 6.6e-09 | -0.95 | 0.03 | 0.97 | FALSE |
50 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CROCC | 0.08 | 0.03 | enet | 6 | 0.06 | 5.2e-07 | -5.8 | -5.7 | 1.0e-08 | 0.71 | 0.03 | 0.95 | FALSE |
51 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MFAP2 | 0.02 | 0.02 | lasso | 1 | 0.02 | 2.4e-03 | -5.3 | 5.3 | 9.4e-08 | -0.98 | 0.00 | 0.94 | FALSE |
52 | The Cancer Genome Atlas | Rectum Adenocarcinoma | ATP13A2 | 0.13 | 0.06 | lasso | 3 | 0.08 | 6.4e-03 | -5.4 | 5.5 | 3.9e-08 | -0.87 | 0.02 | 0.40 | FALSE |
53 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CROCC | 0.06 | 0.06 | lasso | 1 | 0.05 | 2.8e-04 | -5.4 | -5.3 | 8.8e-08 | 0.85 | 0.02 | 0.73 | FALSE |