Best TWAS P=4.89e-15 · Best GWAS P=3.26e-13 conditioned to 0.000755
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | BBS12 | 0.06 | 0.06 | enet | 9 | 0.06 | 8.7e-08 | -5.4 | -5.7 | 1.5e-08 | 0.12 | 0.99 | 0.01 | FALSE |
2 | GTEx | Adipose Subcutaneous | ANXA5 | 0.25 | 0.16 | lasso | 5 | 0.19 | 9.9e-16 | -5.6 | 5.7 | 1.5e-08 | -0.03 | 0.05 | 0.95 | FALSE |
3 | GTEx | Adrenal Gland | ANXA5 | 0.23 | 0.16 | lasso | 4 | 0.15 | 5.3e-06 | -6.7 | 6.4 | 1.4e-10 | -0.01 | 0.00 | 1.00 | TRUE |
4 | GTEx | Artery Aorta | ANXA5 | 0.23 | 0.21 | lasso | 3 | 0.21 | 1.3e-11 | -5.6 | 5.8 | 6.5e-09 | 0.01 | 0.42 | 0.58 | FALSE |
5 | GTEx | Artery Tibial | FGF2 | 0.18 | 0.05 | lasso | 3 | 0.02 | 1.3e-02 | -7.1 | -7.2 | 5.4e-13 | 0.33 | 0.01 | 0.92 | FALSE |
6 | GTEx | Artery Tibial | ANXA5 | 0.32 | 0.22 | lasso | 8 | 0.20 | 1.2e-15 | -5.6 | 6.0 | 2.7e-09 | 0.00 | 0.26 | 0.74 | FALSE |
7 | GTEx | Brain Nucleus accumbens basal ganglia | ANXA5 | 0.46 | 0.26 | lasso | 7 | 0.23 | 9.9e-07 | -5.6 | 5.7 | 1.1e-08 | 0.01 | 0.16 | 0.75 | FALSE |
8 | GTEx | Breast Mammary Tissue (Female) | FGF2 | 0.20 | 0.00 | enet | 4 | -0.01 | 7.9e-01 | 4.2 | -5.5 | 4.1e-08 | 0.20 | 0.06 | 0.31 | FALSE |
9 | GTEx | Breast Mammary Tissue (Female) | NUDT6 | 0.30 | -0.01 | enet | 30 | 0.00 | 2.6e-01 | -3.2 | -7.8 | 4.9e-15 | 0.57 | 0.03 | 0.38 | TRUE |
10 | GTEx | Cells EBV-transformed lymphocytes | ANXA5 | 0.45 | 0.06 | enet | 26 | 0.23 | 3.7e-08 | -5.6 | 6.1 | 8.1e-10 | -0.06 | 0.01 | 0.97 | FALSE |
11 | GTEx | Nerve Tibial | ANXA5 | 0.16 | 0.07 | lasso | 4 | 0.09 | 1.1e-06 | 5.4 | 5.3 | 1.4e-07 | -0.04 | 0.06 | 0.93 | FALSE |
12 | GTEx | Pituitary | ANXA5 | 0.35 | 0.36 | lasso | 4 | 0.27 | 1.7e-07 | -5.6 | 5.6 | 2.6e-08 | 0.01 | 0.09 | 0.90 | FALSE |
13 | GTEx | Spleen | ANXA5 | 0.42 | 0.28 | lasso | 6 | 0.23 | 1.7e-06 | -5.6 | 5.2 | 1.9e-07 | 0.00 | 0.24 | 0.52 | FALSE |
14 | GTEx | Testis | ANXA5 | 0.43 | 0.33 | lasso | 3 | 0.32 | 6.3e-15 | -5.6 | 5.6 | 2.2e-08 | 0.01 | 0.13 | 0.87 | FALSE |
15 | GTEx | Thyroid | ANXA5 | 0.29 | 0.18 | lasso | 7 | 0.18 | 1.6e-13 | -5.6 | 5.9 | 2.9e-09 | 0.00 | 0.07 | 0.93 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | ANXA5 | 0.48 | 0.47 | lasso | 9 | 0.49 | 5.3e-72 | -5.6 | 5.2 | 2.2e-07 | 0.01 | 0.43 | 0.57 | FALSE |
17 | The Cancer Genome Atlas | Breast Invasive Carcinoma | BBS12 | 0.01 | 0.02 | lasso | 2 | 0.01 | 6.6e-04 | -5.2 | -5.2 | 1.6e-07 | 0.12 | 0.03 | 0.91 | FALSE |
18 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CETN4P | 0.06 | 0.06 | lasso | 2 | 0.06 | 2.0e-11 | -5.2 | -5.2 | 1.7e-07 | 0.12 | 0.01 | 0.99 | FALSE |
19 | The Cancer Genome Atlas | Glioblastoma Multiforme | ANXA5 | 0.29 | 0.07 | blup | 73 | 0.12 | 1.4e-04 | -5.6 | 5.3 | 1.4e-07 | 0.01 | 0.01 | 0.93 | FALSE |
20 | The Cancer Genome Atlas | Glioblastoma Multiforme | CETN4P | 0.12 | 0.08 | blup | 39 | 0.11 | 2.8e-04 | -4.4 | -5.6 | 1.6e-08 | 0.14 | 0.01 | 0.90 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ANXA5 | 0.05 | 0.03 | blup | 75 | 0.03 | 4.7e-04 | -6.7 | 6.2 | 6.8e-10 | 0.01 | 0.00 | 0.99 | FALSE |
22 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CETN4P | 0.08 | 0.10 | lasso | 2 | 0.10 | 4.8e-11 | -5.2 | -5.2 | 1.5e-07 | 0.12 | 0.01 | 0.99 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | FGF2 | 0.06 | 0.04 | blup | 65 | 0.05 | 4.4e-06 | -3.4 | -6.3 | 3.4e-10 | 0.78 | 0.02 | 0.97 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ANXA5 | 0.22 | 0.05 | lasso | 5 | 0.13 | 1.1e-07 | 3.2 | 5.5 | 3.5e-08 | 0.00 | 0.01 | 0.98 | FALSE |
25 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CETN4P | 0.11 | 0.10 | blup | 39 | 0.10 | 1.5e-06 | -5.3 | -5.6 | 1.9e-08 | 0.14 | 0.01 | 0.99 | FALSE |
26 | The Cancer Genome Atlas | Brain Lower Grade Glioma | BBS12 | 0.06 | 0.06 | lasso | 5 | 0.06 | 4.0e-07 | -5.1 | -5.2 | 2.0e-07 | 0.09 | 0.04 | 0.96 | FALSE |
27 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | CETN4P | 0.14 | 0.09 | lasso | 2 | 0.05 | 1.4e-03 | -5.3 | -5.3 | 1.2e-07 | 0.12 | 0.01 | 0.95 | FALSE |
28 | The Cancer Genome Atlas | Lung Adenocarcinoma | CETN4P | 0.04 | 0.04 | blup | 39 | 0.05 | 1.2e-06 | -5.4 | -5.7 | 1.5e-08 | 0.14 | 0.01 | 0.99 | FALSE |
29 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ANXA5 | 0.07 | 0.04 | blup | 75 | 0.04 | 5.2e-05 | -5.6 | 5.3 | 9.7e-08 | 0.01 | 0.02 | 0.98 | FALSE |
30 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ANXA5 | 0.08 | 0.06 | lasso | 3 | 0.06 | 7.8e-05 | -5.6 | 6.0 | 1.6e-09 | 0.00 | 0.05 | 0.83 | FALSE |
31 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CETN4P | 0.07 | 0.12 | lasso | 1 | 0.11 | 2.6e-05 | -5.4 | -5.4 | 6.4e-08 | 0.06 | 0.01 | 0.96 | FALSE |
32 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ANXA5 | 0.23 | 0.24 | lasso | 7 | 0.22 | 2.7e-09 | -5.8 | 6.1 | 1.4e-09 | 0.01 | 0.18 | 0.82 | FALSE |
33 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CETN4P | 0.17 | 0.14 | lasso | 4 | 0.15 | 1.8e-06 | -5.3 | -5.4 | 5.6e-08 | 0.11 | 0.01 | 0.99 | FALSE |
34 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ANXA5 | 0.05 | 0.03 | enet | 7 | 0.04 | 3.3e-05 | -6.7 | 6.4 | 1.7e-10 | 0.01 | 0.00 | 1.00 | FALSE |
35 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CETN4P | 0.05 | 0.04 | lasso | 3 | 0.04 | 5.9e-05 | -5.3 | -5.3 | 1.2e-07 | 0.12 | 0.01 | 0.98 | FALSE |
36 | The Cancer Genome Atlas | Soft Tissue Sarcoma | ANXA5 | 0.06 | 0.03 | lasso | 3 | 0.03 | 9.8e-03 | -5.6 | 6.0 | 1.5e-09 | 0.00 | 0.02 | 0.84 | FALSE |
37 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BBS12 | 0.08 | 0.02 | blup | 42 | 0.04 | 1.1e-02 | -6.1 | -5.3 | 1.0e-07 | 0.12 | 0.01 | 0.77 | FALSE |
38 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | CETN4P | 0.10 | 0.05 | blup | 39 | 0.07 | 2.5e-03 | -5.3 | -5.5 | 3.6e-08 | 0.15 | 0.01 | 0.85 | FALSE |
39 | The Cancer Genome Atlas | Thyroid Carcinoma | CETN4P | 0.10 | 0.10 | blup | 39 | 0.11 | 1.0e-10 | -5.4 | -5.7 | 9.0e-09 | 0.11 | 0.00 | 1.00 | FALSE |