Best TWAS P=2.14e-28 · Best GWAS P=3.05e-30 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DRAM2 | 0.42 | 0.50 | lasso | 3 | 0.50 | 3.1e-70 | 8.3 | 8.4 | 3.5e-17 | -0.32 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | DRAM2 | 0.47 | 0.45 | lasso | 7 | 0.48 | 2.2e-44 | 8.7 | 9.1 | 7.2e-20 | -0.30 | 0.92 | 0.08 | FALSE |
3 | GTEx | Adipose Visceral Omentum | DRAM2 | 0.55 | 0.45 | lasso | 8 | 0.44 | 8.4e-25 | 8.7 | 9.2 | 5.6e-20 | -0.33 | 0.98 | 0.02 | FALSE |
4 | GTEx | Adrenal Gland | DRAM2 | 0.59 | 0.40 | enet | 25 | 0.40 | 1.3e-15 | 8.7 | 8.6 | 1.1e-17 | -0.28 | 0.19 | 0.81 | FALSE |
5 | GTEx | Artery Aorta | DRAM2 | 0.63 | 0.49 | lasso | 7 | 0.49 | 1.1e-30 | 8.3 | 8.5 | 2.6e-17 | -0.32 | 1.00 | 0.00 | FALSE |
6 | GTEx | Artery Coronary | DRAM2 | 0.44 | 0.24 | enet | 26 | 0.27 | 1.1e-09 | 8.7 | 8.5 | 2.0e-17 | -0.33 | 0.34 | 0.66 | FALSE |
7 | GTEx | Artery Tibial | RAP1A | 0.14 | 0.00 | lasso | 3 | 0.00 | 3.8e-01 | -11.4 | 9.8 | 8.9e-23 | -0.85 | 0.01 | 0.91 | FALSE |
8 | GTEx | Artery Tibial | DRAM2 | 0.41 | 0.40 | lasso | 4 | 0.40 | 1.6e-33 | 8.3 | 8.5 | 1.9e-17 | -0.32 | 1.00 | 0.00 | FALSE |
9 | GTEx | Brain Caudate basal ganglia | DRAM2 | 0.30 | 0.19 | lasso | 4 | 0.15 | 3.4e-05 | 8.3 | 7.9 | 3.0e-15 | -0.32 | 0.14 | 0.72 | FALSE |
10 | GTEx | Brain Cerebellar Hemisphere | DRAM2 | 0.53 | 0.47 | lasso | 3 | 0.46 | 1.5e-13 | 8.3 | 8.1 | 6.6e-16 | -0.33 | 0.17 | 0.82 | FALSE |
11 | GTEx | Brain Cerebellum | DRAM2 | 0.69 | 0.52 | lasso | 11 | 0.49 | 1.8e-16 | 8.3 | 7.8 | 4.4e-15 | -0.31 | 0.57 | 0.43 | FALSE |
12 | GTEx | Brain Cortex | DRAM2 | 0.35 | 0.28 | lasso | 5 | 0.30 | 3.9e-09 | 8.3 | 8.2 | 1.5e-16 | -0.29 | 0.30 | 0.66 | FALSE |
13 | GTEx | Brain Nucleus accumbens basal ganglia | DRAM2 | 0.43 | 0.47 | lasso | 2 | 0.45 | 1.7e-13 | 8.3 | 8.2 | 1.7e-16 | -0.32 | 0.88 | 0.11 | FALSE |
14 | GTEx | Brain Putamen basal ganglia | DRAM2 | 0.42 | 0.31 | lasso | 6 | 0.35 | 4.3e-09 | 8.7 | 8.8 | 1.7e-18 | -0.32 | 0.05 | 0.93 | FALSE |
15 | GTEx | Breast Mammary Tissue | DRAM2 | 0.39 | 0.31 | lasso | 2 | 0.32 | 3.9e-17 | 8.3 | 8.3 | 9.5e-17 | -0.32 | 1.00 | 0.00 | FALSE |
16 | GTEx | Breast Mammary Tissue (Female) | DRAM2 | 0.30 | 0.18 | lasso | 4 | 0.22 | 3.9e-07 | 8.3 | 7.8 | 4.4e-15 | -0.22 | 0.32 | 0.27 | FALSE |
17 | GTEx | Cells Transformed fibroblasts | CEPT1 | 0.38 | 0.27 | lasso | 6 | 0.31 | 7.7e-24 | 11.4 | 8.1 | 3.9e-16 | -0.18 | 0.00 | 1.00 | TRUE |
18 | GTEx | Cells Transformed fibroblasts | DRAM2 | 0.43 | 0.36 | lasso | 3 | 0.45 | 1.1e-36 | 11.4 | 9.8 | 1.2e-22 | -0.33 | 0.00 | 1.00 | FALSE |
19 | GTEx | Cells Transformed fibroblasts | DENND2D | 0.31 | 0.16 | lasso | 6 | 0.19 | 4.9e-14 | 11.4 | 9.6 | 7.3e-22 | -0.31 | 0.00 | 1.00 | FALSE |
20 | GTEx | Cells Transformed fibroblasts | RP5-1180E21.5 | 0.24 | 0.08 | lasso | 8 | 0.15 | 3.3e-11 | 11.4 | 7.0 | 2.6e-12 | -0.18 | 0.00 | 1.00 | FALSE |
21 | GTEx | Colon Sigmoid | DRAM2 | 0.56 | 0.50 | lasso | 5 | 0.50 | 3.0e-20 | 8.7 | 8.9 | 3.7e-19 | -0.31 | 0.82 | 0.18 | FALSE |
22 | GTEx | Colon Transverse | DRAM2 | 0.46 | 0.41 | lasso | 5 | 0.41 | 5.6e-21 | 8.3 | 7.5 | 5.4e-14 | -0.27 | 0.95 | 0.05 | FALSE |
23 | GTEx | Esophagus Gastroesophageal Junction | DRAM2 | 0.35 | 0.25 | lasso | 7 | 0.28 | 1.2e-10 | 8.7 | 8.1 | 6.0e-16 | -0.33 | 0.56 | 0.44 | FALSE |
24 | GTEx | Esophagus Mucosa | DRAM2 | 0.35 | 0.34 | lasso | 5 | 0.36 | 1.0e-24 | 9.4 | 9.8 | 1.5e-22 | -0.39 | 1.00 | 0.00 | FALSE |
25 | GTEx | Esophagus Mucosa | DENND2D | 0.21 | 0.13 | lasso | 5 | 0.14 | 2.3e-09 | 11.4 | -9.8 | 1.6e-22 | 0.29 | 0.00 | 1.00 | FALSE |
26 | GTEx | Esophagus Muscularis | DRAM2 | 0.52 | 0.45 | lasso | 8 | 0.45 | 7.1e-30 | 8.3 | 8.7 | 3.5e-18 | -0.39 | 1.00 | 0.00 | FALSE |
27 | GTEx | Heart Atrial Appendage | DRAM2 | 0.44 | 0.33 | lasso | 3 | 0.30 | 9.1e-14 | 8.3 | 8.2 | 3.1e-16 | -0.34 | 0.63 | 0.37 | FALSE |
28 | GTEx | Heart Left Ventricle | DRAM2 | 0.32 | 0.25 | lasso | 7 | 0.21 | 2.1e-11 | 8.3 | 8.3 | 7.5e-17 | -0.32 | 0.56 | 0.44 | FALSE |
29 | GTEx | Liver | DRAM2 | 0.55 | 0.32 | lasso | 7 | 0.32 | 1.1e-09 | 8.7 | 7.7 | 1.2e-14 | -0.24 | 0.22 | 0.78 | FALSE |
30 | GTEx | Lung | DRAM2 | 0.39 | 0.42 | lasso | 8 | 0.41 | 9.7e-34 | 8.3 | 8.6 | 8.7e-18 | -0.33 | 1.00 | 0.00 | FALSE |
31 | GTEx | Muscle Skeletal | DRAM2 | 0.44 | 0.39 | lasso | 4 | 0.39 | 2.8e-40 | 8.3 | 8.4 | 5.3e-17 | -0.32 | 1.00 | 0.00 | FALSE |
32 | GTEx | Nerve Tibial | DRAM2 | 0.53 | 0.56 | lasso | 4 | 0.55 | 2.1e-46 | 8.3 | 8.3 | 6.6e-17 | -0.32 | 1.00 | 0.00 | FALSE |
33 | GTEx | Pancreas | DRAM2 | 0.33 | 0.31 | lasso | 2 | 0.27 | 6.0e-12 | 8.3 | 8.3 | 1.3e-16 | -0.32 | 0.99 | 0.01 | FALSE |
34 | GTEx | Pituitary | DRAM2 | 0.58 | 0.31 | lasso | 12 | 0.28 | 8.8e-08 | 8.3 | 7.9 | 2.5e-15 | -0.30 | 0.11 | 0.86 | FALSE |
35 | GTEx | Pituitary | DENND2D | 0.34 | 0.10 | lasso | 6 | 0.15 | 1.1e-04 | -8.0 | -10.4 | 2.3e-25 | 0.64 | 0.04 | 0.83 | FALSE |
36 | GTEx | Prostate | DRAM2 | 0.43 | 0.26 | lasso | 6 | 0.15 | 1.3e-04 | 8.3 | 8.3 | 1.0e-16 | -0.31 | 0.07 | 0.87 | FALSE |
37 | GTEx | Skin Not Sun Exposed Suprapubic | CD53 | 0.16 | 0.00 | enet | 31 | 0.02 | 3.6e-02 | 4.1 | 7.3 | 3.7e-13 | -0.41 | 0.10 | 0.06 | FALSE |
38 | GTEx | Skin Not Sun Exposed Suprapubic | DRAM2 | 0.47 | 0.38 | enet | 9 | 0.34 | 1.9e-19 | 8.3 | 8.8 | 1.2e-18 | -0.29 | 0.88 | 0.12 | FALSE |
39 | GTEx | Skin Sun Exposed Lower leg | DRAM2 | 0.42 | 0.41 | lasso | 5 | 0.41 | 1.2e-36 | 8.3 | 9.0 | 1.7e-19 | -0.30 | 0.96 | 0.04 | FALSE |
40 | GTEx | Stomach | DRAM2 | 0.34 | 0.33 | lasso | 2 | 0.32 | 9.7e-16 | 8.3 | 8.3 | 1.3e-16 | -0.32 | 0.96 | 0.04 | FALSE |
41 | GTEx | Testis | DRAM2 | 0.20 | 0.13 | lasso | 5 | 0.16 | 1.5e-07 | 8.3 | 5.8 | 6.5e-09 | -0.05 | 0.01 | 0.99 | FALSE |
42 | GTEx | Thyroid | DRAM2 | 0.39 | 0.46 | lasso | 3 | 0.45 | 3.2e-38 | 8.3 | 8.4 | 6.3e-17 | -0.32 | 1.00 | 0.00 | FALSE |
43 | GTEx | Uterus | DRAM2 | 0.45 | 0.20 | lasso | 7 | 0.14 | 1.0e-03 | 8.7 | 10.0 | 1.0e-23 | -0.34 | 0.01 | 0.93 | FALSE |
44 | GTEx | Vagina | DRAM2 | 0.43 | 0.45 | lasso | 2 | 0.46 | 7.4e-12 | 8.3 | 8.1 | 5.4e-16 | -0.31 | 0.31 | 0.64 | FALSE |
45 | GTEx | Whole Blood | DRAM2 | 0.15 | 0.11 | lasso | 10 | 0.12 | 6.7e-11 | 11.4 | 10.5 | 1.4e-25 | -0.37 | 0.00 | 1.00 | FALSE |
46 | METSIM | Adipose | CEPT1 | 0.18 | 0.16 | lasso | 4 | 0.17 | 1.2e-24 | 11.4 | 8.5 | 1.3e-17 | -0.12 | 0.00 | 1.00 | FALSE |
47 | METSIM | Adipose | CHI3L2 | 0.04 | 0.01 | bslmm | 589 | 0.01 | 3.4e-03 | 9.4 | 5.8 | 7.1e-09 | -0.28 | 0.05 | 0.61 | FALSE |
48 | METSIM | Adipose | DRAM2 | 0.42 | 0.36 | lasso | 6 | 0.40 | 1.0e-64 | 8.7 | 7.2 | 4.2e-13 | -0.14 | 0.57 | 0.43 | FALSE |
49 | ROSMAP | Brain Pre-frontal Cortex | DRAM2 | 0.30 | 0.34 | lasso | 7 | 0.35 | 4.1e-47 | 8.3 | 8.0 | 1.1e-15 | -0.26 | 1.00 | 0.00 | FALSE |
50 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | WNT2B | 0.10 | 0.04 | blup | 46 | 0.03 | 2.7e-03 | -5.1 | -6.5 | 9.1e-11 | 0.05 | 0.01 | 0.99 | TRUE |
51 | The Cancer Genome Atlas | Colon Adenocarcinoma | DENND2D | 0.13 | 0.00 | blup | 77 | 0.05 | 6.1e-04 | -1.7 | -6.2 | 4.9e-10 | 0.42 | 0.01 | 0.22 | FALSE |
52 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CEPT1 | 0.03 | 0.03 | blup | 57 | 0.02 | 2.2e-03 | 1.1 | -6.6 | 3.4e-11 | 0.57 | 0.08 | 0.35 | TRUE |
53 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CTTNBP2NL | 0.04 | 0.00 | blup | 53 | 0.02 | 2.1e-03 | -2.0 | -5.3 | 1.4e-07 | 0.03 | 0.01 | 0.68 | FALSE |
54 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DRAM2 | 0.14 | 0.13 | enet | 7 | 0.15 | 2.9e-16 | 8.7 | 5.7 | 1.3e-08 | -0.16 | 1.00 | 0.00 | FALSE |
55 | The Cancer Genome Atlas | Lung Adenocarcinoma | DENND2D | 0.06 | 0.01 | enet | 15 | 0.01 | 4.7e-02 | -7.3 | -8.3 | 7.7e-17 | 0.58 | 0.03 | 0.32 | FALSE |
56 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DRAM2 | 0.16 | 0.02 | blup | 39 | 0.08 | 4.4e-04 | 5.6 | 5.8 | 9.2e-09 | -0.10 | 0.04 | 0.07 | FALSE |
57 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | DRAM2 | 0.15 | 0.07 | lasso | 3 | 0.08 | 6.3e-04 | 8.7 | 9.4 | 5.9e-21 | -0.40 | 0.08 | 0.55 | FALSE |
58 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DENND2D | 0.06 | 0.02 | blup | 77 | 0.02 | 3.2e-03 | -10.0 | -7.1 | 9.8e-13 | 0.71 | 0.01 | 0.56 | TRUE |
59 | The Cancer Genome Atlas | Thyroid Carcinoma | DENND2D | 0.13 | 0.06 | lasso | 3 | 0.06 | 3.9e-06 | 11.4 | -11.1 | 2.1e-28 | 0.36 | 0.00 | 1.00 | TRUE |
60 | The Cancer Genome Atlas | Thyroid Carcinoma | DRAM2 | 0.17 | 0.15 | enet | 9 | 0.14 | 7.0e-14 | 8.7 | 9.7 | 2.5e-22 | -0.35 | 1.00 | 0.00 | FALSE |