Best TWAS P=4.02e-16 · Best GWAS P=3.62e-16 conditioned to 0.129
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | NARS2 | 0.44 | 0.57 | bslmm | 502 | 0.56 | 2.1e-81 | -6.8 | 6.7 | 1.7e-11 | -0.69 | 0.98 | 0.02 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | USP35 | 0.06 | 0.05 | blup | 363 | 0.04 | 1.6e-05 | -7.0 | -7.5 | 5.8e-14 | 0.67 | 0.35 | 0.49 | FALSE |
3 | GTEx | Adipose Subcutaneous | NARS2 | 0.19 | 0.12 | lasso | 5 | 0.09 | 3.6e-08 | -6.8 | 6.9 | 6.1e-12 | -0.73 | 0.82 | 0.17 | FALSE |
4 | GTEx | Adipose Visceral Omentum | ALG8 | 0.11 | 0.01 | enet | 8 | 0.02 | 3.7e-02 | -7.6 | -7.2 | 4.6e-13 | 0.73 | 0.15 | 0.34 | FALSE |
5 | GTEx | Adrenal Gland | NARS2 | 0.43 | 0.09 | enet | 47 | 0.22 | 2.6e-08 | -6.8 | 6.2 | 5.3e-10 | -0.44 | 0.54 | 0.26 | FALSE |
6 | GTEx | Artery Aorta | NARS2 | 0.26 | 0.29 | lasso | 2 | 0.28 | 1.7e-15 | -6.8 | 6.9 | 6.3e-12 | -0.70 | 0.98 | 0.02 | FALSE |
7 | GTEx | Artery Coronary | NARS2 | 0.19 | 0.20 | lasso | 2 | 0.17 | 2.7e-06 | -6.8 | 6.9 | 5.9e-12 | -0.70 | 0.64 | 0.28 | FALSE |
8 | GTEx | Artery Tibial | GAB2 | 0.06 | 0.00 | lasso | 2 | 0.01 | 2.4e-02 | -7.4 | 7.4 | 1.1e-13 | -0.90 | 0.11 | 0.58 | FALSE |
9 | GTEx | Artery Tibial | NARS2 | 0.18 | 0.20 | lasso | 2 | 0.19 | 5.9e-15 | -6.8 | 6.9 | 7.2e-12 | -0.70 | 0.98 | 0.02 | FALSE |
10 | GTEx | Brain Cerebellar Hemisphere | USP35 | 0.19 | 0.07 | enet | 13 | 0.09 | 2.5e-03 | -7.6 | -7.6 | 4.2e-14 | 0.87 | 0.12 | 0.54 | FALSE |
11 | GTEx | Brain Cerebellar Hemisphere | NARS2 | 0.17 | 0.10 | lasso | 6 | 0.10 | 1.5e-03 | -6.9 | 7.6 | 3.4e-14 | -0.76 | 0.13 | 0.64 | FALSE |
12 | GTEx | Esophagus Gastroesophageal Junction | NARS2 | 0.15 | 0.22 | lasso | 5 | 0.20 | 9.6e-08 | -6.9 | 7.0 | 3.5e-12 | -0.70 | 0.92 | 0.06 | FALSE |
13 | GTEx | Esophagus Gastroesophageal Junction | RP11-452H21.1 | 0.19 | 0.19 | lasso | 5 | 0.20 | 7.7e-08 | -7.0 | 6.8 | 9.6e-12 | -0.71 | 0.64 | 0.26 | FALSE |
14 | GTEx | Esophagus Muscularis | GAB2 | 0.05 | 0.04 | lasso | 7 | 0.04 | 1.8e-03 | -7.6 | 8.0 | 1.5e-15 | -0.89 | 0.13 | 0.79 | FALSE |
15 | GTEx | Esophagus Muscularis | NARS2 | 0.25 | 0.19 | lasso | 3 | 0.17 | 8.7e-11 | -6.8 | 6.8 | 1.1e-11 | -0.70 | 0.98 | 0.02 | FALSE |
16 | GTEx | Esophagus Muscularis | RP11-452H21.1 | 0.10 | 0.08 | lasso | 6 | 0.07 | 2.6e-05 | -6.9 | 7.0 | 3.4e-12 | -0.69 | 0.76 | 0.13 | FALSE |
17 | GTEx | Liver | GAB2 | 0.17 | -0.01 | enet | 20 | -0.01 | 5.6e-01 | -7.3 | -6.6 | 4.7e-11 | 0.74 | 0.04 | 0.53 | FALSE |
18 | GTEx | Lung | NARS2 | 0.21 | 0.20 | lasso | 3 | 0.21 | 3.5e-16 | -6.9 | 6.9 | 6.0e-12 | -0.70 | 0.98 | 0.02 | FALSE |
19 | GTEx | Muscle Skeletal | NARS2 | 0.19 | 0.05 | lasso | 2 | 0.04 | 1.1e-04 | -6.8 | 7.0 | 2.1e-12 | -0.69 | 0.29 | 0.03 | FALSE |
20 | GTEx | Nerve Tibial | NARS2 | 0.20 | 0.18 | lasso | 3 | 0.18 | 2.0e-12 | -6.8 | 6.9 | 6.6e-12 | -0.70 | 0.98 | 0.02 | FALSE |
21 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-7I15.3 | 0.07 | 0.01 | lasso | 3 | 0.02 | 3.5e-02 | -7.4 | -7.5 | 8.4e-14 | 0.79 | 0.13 | 0.50 | FALSE |
22 | GTEx | Skin Sun Exposed Lower leg | GAB2 | 0.06 | 0.01 | enet | 26 | 0.03 | 2.2e-03 | -7.5 | 5.6 | 1.8e-08 | -0.71 | 0.11 | 0.84 | FALSE |
23 | GTEx | Stomach | NARS2 | 0.27 | 0.05 | lasso | 8 | 0.06 | 6.1e-04 | -6.8 | 7.4 | 1.1e-13 | -0.57 | 0.20 | 0.08 | FALSE |
24 | GTEx | Testis | USP35 | 0.07 | 0.06 | lasso | 2 | 0.07 | 6.4e-04 | -7.3 | -7.3 | 2.3e-13 | 0.89 | 0.08 | 0.86 | FALSE |
25 | GTEx | Thyroid | NARS2 | 0.30 | 0.30 | lasso | 4 | 0.32 | 1.4e-24 | -6.9 | 6.7 | 2.2e-11 | -0.69 | 0.98 | 0.02 | FALSE |
26 | GTEx | Thyroid | RP11-452H21.1 | 0.13 | 0.06 | lasso | 4 | 0.03 | 3.6e-03 | -7.0 | 6.5 | 9.3e-11 | -0.69 | 0.74 | 0.09 | FALSE |
27 | METSIM | Adipose | NARS2 | 0.10 | 0.06 | bslmm | 487 | 0.06 | 7.2e-10 | -6.8 | 5.2 | 2.6e-07 | -0.32 | 0.98 | 0.02 | FALSE |
28 | METSIM | Adipose | USP35 | 0.05 | 0.05 | lasso | 11 | 0.04 | 3.0e-06 | -7.4 | -7.5 | 8.4e-14 | 0.89 | 0.44 | 0.56 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | GAB2 | 0.05 | 0.00 | blup | 435 | 0.02 | 8.0e-04 | -6.7 | 6.4 | 1.9e-10 | -0.81 | 0.11 | 0.84 | FALSE |
30 | ROSMAP | Brain Pre-frontal Cortex | NARS2 | 0.17 | 0.17 | lasso | 2 | 0.17 | 1.8e-21 | -6.8 | 6.9 | 5.2e-12 | -0.70 | 0.98 | 0.02 | FALSE |
31 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NARS2 | 0.12 | 0.05 | lasso | 2 | 0.05 | 2.0e-10 | -6.7 | 6.8 | 1.4e-11 | -0.69 | 0.98 | 0.02 | FALSE |
32 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | NARS2 | 0.09 | 0.04 | blup | 60 | 0.04 | 5.9e-03 | -7.0 | 7.5 | 6.1e-14 | -0.73 | 0.10 | 0.23 | FALSE |
33 | The Cancer Genome Atlas | Glioblastoma Multiforme | GAB2 | 0.10 | 0.07 | blup | 100 | 0.09 | 8.8e-04 | -7.4 | 7.8 | 5.6e-15 | -0.93 | 0.05 | 0.61 | FALSE |
34 | The Cancer Genome Atlas | Glioblastoma Multiforme | NARS2 | 0.19 | 0.14 | lasso | 2 | 0.13 | 9.8e-05 | -6.9 | 6.2 | 6.6e-10 | -0.68 | 0.10 | 0.53 | FALSE |
35 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NARS2 | 0.14 | 0.06 | lasso | 2 | 0.06 | 2.9e-07 | -6.9 | 6.9 | 4.4e-12 | -0.70 | 0.96 | 0.04 | FALSE |
36 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NARS2 | 0.24 | 0.13 | lasso | 2 | 0.13 | 3.1e-14 | -7.0 | 7.0 | 2.7e-12 | -0.69 | 0.96 | 0.04 | FALSE |
37 | The Cancer Genome Atlas | Lung Adenocarcinoma | NARS2 | 0.17 | 0.09 | enet | 10 | 0.10 | 1.6e-11 | -6.9 | 5.9 | 3.6e-09 | -0.61 | 0.98 | 0.02 | FALSE |
38 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NARS2 | 0.11 | 0.04 | lasso | 3 | 0.04 | 9.9e-06 | -7.0 | 6.9 | 3.7e-12 | -0.70 | 0.73 | 0.16 | FALSE |
39 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | NARS2 | 0.11 | 0.01 | enet | 10 | 0.04 | 1.2e-03 | -7.0 | 5.6 | 2.2e-08 | -0.61 | 0.03 | 0.22 | FALSE |
40 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NARS2 | 0.20 | 0.21 | lasso | 9 | 0.20 | 5.6e-09 | -6.7 | 6.7 | 2.5e-11 | -0.69 | 0.50 | 0.50 | FALSE |
41 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GAB2 | 0.06 | 0.06 | blup | 100 | 0.07 | 7.8e-08 | -7.4 | 8.1 | 4.0e-16 | -0.94 | 0.06 | 0.94 | TRUE |
42 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KCTD21 | 0.03 | 0.00 | blup | 51 | 0.01 | 7.2e-02 | -7.4 | 5.6 | 2.2e-08 | -0.77 | 0.01 | 0.65 | FALSE |
43 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NARS2 | 0.30 | 0.19 | lasso | 2 | 0.17 | 2.6e-17 | -6.9 | 6.9 | 5.5e-12 | -0.70 | 0.97 | 0.03 | FALSE |
44 | The Cancer Genome Atlas | Soft Tissue Sarcoma | NARS2 | 0.11 | 0.05 | enet | 7 | 0.06 | 2.0e-04 | -6.9 | 6.8 | 8.1e-12 | -0.62 | 0.12 | 0.56 | FALSE |
45 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GAB2 | 0.04 | 0.04 | blup | 100 | 0.04 | 1.4e-03 | -7.6 | 7.8 | 5.2e-15 | -0.91 | 0.09 | 0.79 | FALSE |
46 | The Cancer Genome Atlas | Thyroid Carcinoma | NARS2 | 0.27 | 0.27 | lasso | 4 | 0.27 | 1.9e-26 | -6.7 | 6.8 | 9.7e-12 | -0.70 | 0.99 | 0.01 | FALSE |