Best TWAS P=2.11e-25 · Best GWAS P=5.84e-26 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DNAH12 | 0.07 | 0.07 | lasso | 3 | 0.07 | 2.1e-09 | 6.79 | 6.4 | 1.4e-10 | 0.56 | 1.00 | 0.00 | FALSE |
2 | GTEx | Colon Sigmoid | RP11-755B10.4 | 0.20 | 0.17 | lasso | 5 | 0.16 | 3.3e-06 | -3.86 | -5.5 | 4.4e-08 | -0.31 | 0.52 | 0.18 | FALSE |
3 | GTEx | Esophagus Muscularis | SLMAP | 0.06 | 0.05 | lasso | 4 | 0.05 | 5.2e-04 | 10.53 | 10.4 | 2.1e-25 | 0.97 | 0.02 | 0.96 | TRUE |
4 | GTEx | Muscle Skeletal | RP11-755B10.4 | 0.08 | 0.03 | lasso | 6 | 0.06 | 2.5e-06 | -3.80 | -5.5 | 3.9e-08 | -0.40 | 0.94 | 0.02 | FALSE |
5 | METSIM | Adipose | APPL1 | 0.04 | 0.00 | blup | 416 | 0.02 | 2.1e-04 | -0.81 | -5.2 | 1.9e-07 | -0.22 | 0.08 | 0.04 | FALSE |
6 | METSIM | Adipose | DNAH12 | 0.03 | 0.03 | lasso | 3 | 0.02 | 1.4e-03 | 7.19 | 7.2 | 6.2e-13 | 0.67 | 0.61 | 0.22 | FALSE |
7 | ROSMAP | Brain Pre-frontal Cortex | ARF4 | 0.12 | 0.15 | lasso | 7 | 0.16 | 1.4e-19 | -4.96 | -5.7 | 1.3e-08 | -0.32 | 1.00 | 0.00 | FALSE |
8 | ROSMAP | Brain Pre-frontal Cortex | DNAH12 | 0.04 | 0.00 | blup | 448 | 0.02 | 1.0e-03 | 6.51 | 7.6 | 2.2e-14 | 0.42 | 0.18 | 0.09 | FALSE |
9 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ASB14 | 0.05 | 0.03 | enet | 7 | 0.03 | 3.7e-07 | -4.70 | -5.5 | 3.5e-08 | -0.24 | 0.99 | 0.00 | FALSE |
10 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SLMAP | 0.01 | 0.01 | blup | 86 | 0.01 | 9.1e-03 | 10.42 | 9.8 | 1.8e-22 | 0.96 | 0.02 | 0.84 | FALSE |
11 | The Cancer Genome Atlas | Esophageal Carcinoma | FAM116A | 0.13 | 0.05 | lasso | 2 | 0.09 | 7.7e-04 | 5.25 | 5.4 | 6.8e-08 | 0.56 | 0.02 | 0.18 | FALSE |
12 | The Cancer Genome Atlas | Glioblastoma Multiforme | CCDC66 | 0.19 | 0.02 | enet | 14 | 0.12 | 1.7e-04 | -3.55 | 5.4 | 6.9e-08 | -0.05 | 0.00 | 0.24 | TRUE |
13 | The Cancer Genome Atlas | Brain Lower Grade Glioma | SPATA12 | 0.04 | 0.02 | blup | 70 | 0.03 | 4.4e-04 | 6.37 | -5.9 | 3.1e-09 | -0.35 | 0.01 | 0.91 | FALSE |
14 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | PDE12 | 0.05 | 0.02 | lasso | 2 | 0.02 | 1.2e-02 | 7.14 | 6.2 | 4.7e-10 | 0.64 | 0.01 | 0.88 | FALSE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | PDE12 | 0.04 | 0.02 | blup | 39 | 0.02 | 2.7e-03 | 6.71 | 6.5 | 9.1e-11 | 0.61 | 0.03 | 0.87 | FALSE |