Best TWAS P=7.07e-15 · Best GWAS P=5.89e-14 conditioned to 0.096
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | USP36 | 0.14 | 0.13 | lasso | 3 | 0.13 | 1.7e-15 | 6.9 | -7.0 | 2.8e-12 | -0.96 | 0.03 | 0.97 | FALSE |
2 | GTEx | Adipose Subcutaneous | CYTH1 | 0.13 | 0.03 | lasso | 5 | 0.04 | 5.7e-04 | 7.2 | 6.8 | 8.6e-12 | 0.83 | 0.06 | 0.73 | FALSE |
3 | GTEx | Brain Cerebellum | USP36 | 0.31 | 0.20 | enet | 18 | 0.13 | 9.7e-05 | 6.3 | -6.0 | 1.6e-09 | -0.79 | 0.08 | 0.79 | FALSE |
4 | GTEx | Brain Nucleus accumbens basal ganglia | USP36 | 0.36 | 0.23 | lasso | 5 | 0.20 | 4.8e-06 | 7.4 | -7.2 | 7.1e-13 | -0.98 | 0.02 | 0.97 | FALSE |
5 | GTEx | Esophagus Mucosa | USP36 | 0.11 | 0.04 | enet | 13 | 0.06 | 1.1e-04 | 7.3 | -7.7 | 1.6e-14 | -0.88 | 0.03 | 0.97 | FALSE |
6 | GTEx | Esophagus Muscularis | USP36 | 0.18 | 0.16 | lasso | 3 | 0.08 | 2.5e-05 | 6.9 | 5.8 | 5.3e-09 | 0.87 | 0.04 | 0.96 | FALSE |
7 | GTEx | Muscle Skeletal | CYTH1 | 0.13 | 0.12 | lasso | 3 | 0.13 | 2.5e-12 | 7.2 | 7.1 | 1.5e-12 | 0.92 | 0.05 | 0.95 | FALSE |
8 | GTEx | Testis | USP36 | 0.32 | 0.24 | lasso | 6 | 0.26 | 6.2e-12 | 5.6 | -6.6 | 3.2e-11 | -0.93 | 0.06 | 0.94 | FALSE |
9 | GTEx | Thyroid | USP36 | 0.21 | 0.15 | enet | 45 | 0.16 | 1.6e-12 | 6.7 | -5.3 | 1.2e-07 | -0.86 | 0.28 | 0.72 | FALSE |
10 | GTEx | Thyroid | CYTH1 | 0.24 | 0.07 | lasso | 11 | 0.06 | 3.4e-05 | 7.3 | 7.8 | 7.1e-15 | 0.85 | 0.03 | 0.97 | TRUE |
11 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TIMP2 | 0.06 | 0.01 | blup | 76 | 0.02 | 3.4e-03 | 3.7 | -5.8 | 8.3e-09 | -0.66 | 0.03 | 0.23 | FALSE |
12 | The Cancer Genome Atlas | Brain Lower Grade Glioma | USP36 | 0.04 | 0.00 | blup | 57 | 0.01 | 2.9e-02 | 7.3 | -6.8 | 1.5e-11 | -0.83 | 0.01 | 0.51 | FALSE |
13 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | USP36 | 0.10 | 0.02 | lasso | 4 | 0.05 | 6.6e-03 | 7.1 | -5.8 | 6.7e-09 | -0.81 | 0.01 | 0.86 | FALSE |
14 | The Cancer Genome Atlas | Thyroid Carcinoma | CYTH1 | 0.11 | 0.09 | lasso | 4 | 0.08 | 2.4e-08 | -5.9 | 5.6 | 2.3e-08 | 0.59 | 0.91 | 0.09 | FALSE |