Best TWAS P=2.61e-10 · Best GWAS P=3.87e-11 conditioned to 0.191
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | PCYT1A | 0.12 | 0.03 | enet | 21 | 0.03 | 1.7e-02 | -3.2 | 5.3 | 1.2e-07 | -0.55 | 0.08 | 0.67 | FALSE |
2 | GTEx | Artery Tibial | RNF168 | 0.11 | 0.05 | lasso | 3 | 0.06 | 3.0e-05 | -6.2 | -6.3 | 3.0e-10 | 0.80 | 0.05 | 0.95 | FALSE |
3 | GTEx | Brain Cerebellum | RNF168 | 0.27 | 0.08 | lasso | 6 | 0.07 | 3.9e-03 | -5.8 | -6.1 | 1.0e-09 | 0.77 | 0.05 | 0.19 | FALSE |
4 | GTEx | Breast Mammary Tissue | TCTEX1D2 | 0.07 | 0.02 | enet | 17 | 0.03 | 6.7e-03 | -6.5 | -6.0 | 2.0e-09 | 0.78 | 0.04 | 0.85 | FALSE |
5 | GTEx | Breast Mammary Tissue (Male) | TCTEX1D2 | 0.07 | 0.01 | lasso | 1 | 0.03 | 6.3e-02 | -5.4 | -5.4 | 5.6e-08 | 0.60 | 0.03 | 0.21 | FALSE |
6 | GTEx | Breast Mammary Tissue (Female) | PCYT1A | 0.05 | 0.01 | lasso | 1 | 0.00 | 4.6e-01 | 5.2 | 5.2 | 2.1e-07 | -0.43 | 0.04 | 0.08 | FALSE |
7 | GTEx | Breast Mammary Tissue (Female) | UBXN7 | 0.11 | 0.03 | lasso | 3 | 0.05 | 1.3e-02 | -6.4 | 5.4 | 6.1e-08 | -0.80 | 0.03 | 0.50 | FALSE |
8 | GTEx | Cells EBV-transformed lymphocytes | UBXN7 | 0.21 | 0.12 | lasso | 5 | 0.12 | 1.1e-04 | -5.8 | -5.4 | 5.6e-08 | 0.73 | 0.15 | 0.41 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | RNF168 | 0.11 | 0.02 | lasso | 5 | 0.03 | 4.5e-03 | -5.8 | -5.4 | 7.8e-08 | 0.63 | 0.08 | 0.33 | FALSE |
10 | GTEx | Colon Sigmoid | RNF168 | 0.18 | 0.05 | lasso | 3 | 0.02 | 4.5e-02 | -5.8 | -5.7 | 1.3e-08 | 0.75 | 0.06 | 0.47 | FALSE |
11 | GTEx | Esophagus Mucosa | UBXN7 | 0.17 | 0.02 | lasso | 4 | 0.01 | 5.1e-02 | 2.4 | 5.4 | 8.4e-08 | -0.60 | 0.04 | 0.32 | FALSE |
12 | GTEx | Esophagus Muscularis | RNF168 | 0.11 | 0.00 | lasso | 8 | 0.01 | 1.3e-01 | -6.3 | -6.3 | 2.6e-10 | 0.63 | 0.03 | 0.80 | TRUE |
13 | METSIM | Adipose | NRROS | 0.10 | 0.01 | enet | 59 | 0.04 | 2.4e-06 | -2.0 | -5.3 | 1.3e-07 | 0.33 | 0.26 | 0.25 | TRUE |
14 | The Cancer Genome Atlas | Brain Lower Grade Glioma | UBXN7 | 0.02 | 0.01 | blup | 45 | 0.02 | 4.2e-03 | -4.4 | 6.3 | 2.7e-10 | -0.74 | 0.03 | 0.49 | FALSE |