Best TWAS P=1.46e-22 · Best GWAS P=6.12e-29 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | MAP2K5 | 0.11 | 0.07 | bslmm | 474 | 0.08 | 1.2e-09 | -7.7 | 7.9 | 2.0e-15 | -0.72 | 0.97 | 0.03 | FALSE |
2 | GTEx | Adipose Subcutaneous | MAP2K5 | 0.14 | 0.18 | lasso | 4 | 0.18 | 1.0e-14 | -7.6 | 7.6 | 3.0e-14 | -0.78 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Visceral Omentum | MAP2K5 | 0.07 | 0.08 | lasso | 3 | 0.05 | 1.0e-03 | -7.3 | 7.8 | 8.7e-15 | -0.80 | 0.05 | 0.91 | FALSE |
4 | GTEx | Artery Aorta | MAP2K5 | 0.06 | 0.05 | enet | 6 | 0.05 | 7.7e-04 | -7.6 | 7.2 | 5.2e-13 | -0.79 | 0.29 | 0.55 | FALSE |
5 | GTEx | Artery Tibial | MAP2K5 | 0.15 | 0.18 | lasso | 3 | 0.18 | 6.3e-14 | -7.6 | 7.5 | 7.5e-14 | -0.78 | 1.00 | 0.00 | FALSE |
6 | GTEx | Brain Cerebellum | MAP2K5 | 0.27 | 0.12 | lasso | 5 | 0.14 | 7.9e-05 | -3.2 | 5.9 | 3.7e-09 | -0.67 | 0.30 | 0.42 | FALSE |
7 | GTEx | Brain Hippocampus | IQCH-AS1 | 0.20 | 0.08 | enet | 11 | 0.05 | 2.2e-02 | 6.2 | -7.3 | 3.5e-13 | 0.48 | 0.17 | 0.11 | TRUE |
8 | GTEx | Breast Mammary Tissue | MAP2K5 | 0.14 | 0.07 | lasso | 5 | 0.09 | 2.8e-05 | -9.4 | 9.3 | 1.0e-20 | -0.88 | 0.04 | 0.96 | FALSE |
9 | GTEx | Esophagus Muscularis | MAP2K5 | 0.24 | 0.14 | lasso | 4 | 0.13 | 2.1e-08 | -7.6 | 7.5 | 8.6e-14 | -0.78 | 1.00 | 0.00 | FALSE |
10 | GTEx | Heart Atrial Appendage | MAP2K5 | 0.16 | 0.08 | lasso | 5 | 0.16 | 1.3e-07 | -7.6 | 9.3 | 2.2e-20 | -0.78 | 0.45 | 0.54 | FALSE |
11 | GTEx | Heart Left Ventricle | MAP2K5 | 0.10 | 0.10 | lasso | 3 | 0.10 | 9.4e-06 | -7.6 | 8.0 | 1.0e-15 | -0.81 | 0.75 | 0.18 | FALSE |
12 | GTEx | Lung | MAP2K5 | 0.12 | 0.09 | enet | 11 | 0.07 | 3.6e-06 | -7.6 | 6.6 | 4.4e-11 | -0.72 | 0.97 | 0.01 | FALSE |
13 | GTEx | Muscle Skeletal | MAP2K5 | 0.08 | 0.03 | lasso | 6 | 0.05 | 1.9e-05 | 8.0 | 9.3 | 1.7e-20 | -0.71 | 0.88 | 0.11 | FALSE |
14 | GTEx | Nerve Tibial | MAP2K5 | 0.19 | 0.21 | lasso | 2 | 0.20 | 3.3e-14 | -7.6 | 7.6 | 3.1e-14 | -0.78 | 1.00 | 0.00 | FALSE |
15 | GTEx | Ovary | MAP2K5 | 0.19 | 0.24 | lasso | 3 | 0.21 | 8.3e-06 | -7.6 | 7.6 | 4.0e-14 | -0.78 | 0.18 | 0.57 | FALSE |
16 | GTEx | Skin Sun Exposed Lower leg | MAP2K5 | 0.13 | 0.06 | lasso | 4 | 0.09 | 4.4e-08 | 6.1 | 7.8 | 8.7e-15 | -0.67 | 0.94 | 0.05 | TRUE |
17 | GTEx | Spleen | MAP2K5 | 0.25 | 0.19 | lasso | 3 | 0.18 | 2.1e-05 | -7.6 | 6.8 | 1.2e-11 | -0.77 | 0.07 | 0.87 | TRUE |
18 | GTEx | Thyroid | MAP2K5 | 0.11 | 0.16 | lasso | 4 | 0.15 | 9.6e-12 | -7.6 | 7.5 | 6.6e-14 | -0.79 | 0.98 | 0.02 | TRUE |
19 | GTEx | Whole Blood | MAP2K5 | 0.09 | 0.06 | lasso | 6 | 0.06 | 8.1e-06 | -7.6 | 6.2 | 7.4e-10 | -0.75 | 0.59 | 0.30 | FALSE |
20 | METSIM | Adipose | MAP2K5 | 0.07 | 0.05 | enet | 19 | 0.06 | 2.8e-09 | -9.4 | 9.8 | 1.5e-22 | -0.84 | 0.14 | 0.86 | TRUE |
21 | METSIM | Adipose | SKOR1 | 0.09 | 0.03 | enet | 27 | 0.04 | 2.6e-07 | -7.1 | 5.2 | 2.0e-07 | -0.40 | 0.87 | 0.09 | FALSE |
22 | NTR | Blood | MAP2K5 | 0.02 | 0.00 | enet | 13 | 0.01 | 5.7e-04 | -7.1 | 8.1 | 5.1e-16 | -0.73 | 0.25 | 0.71 | TRUE |
23 | YFS | Blood | MAP2K5 | 0.05 | 0.07 | lasso | 4 | 0.07 | 1.2e-21 | -7.6 | 7.5 | 4.8e-14 | -0.79 | 1.00 | 0.00 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MAP2K5 | 0.03 | 0.03 | blup | 142 | 0.02 | 1.6e-03 | -7.7 | 9.3 | 1.5e-20 | -0.90 | 0.05 | 0.92 | TRUE |
25 | The Cancer Genome Atlas | Lung Adenocarcinoma | MAP2K5 | 0.04 | 0.04 | lasso | 3 | 0.03 | 8.7e-05 | -7.6 | 7.8 | 4.9e-15 | -0.80 | 0.11 | 0.86 | FALSE |
26 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IQCH | 0.04 | 0.02 | enet | 6 | 0.03 | 1.6e-04 | -7.3 | 5.6 | 2.1e-08 | -0.71 | 0.18 | 0.64 | TRUE |
27 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | IQCH | 0.11 | 0.10 | blup | 112 | 0.10 | 2.3e-07 | -5.8 | 6.0 | 2.4e-09 | -0.60 | 0.03 | 0.97 | TRUE |
28 | The Cancer Genome Atlas | Soft Tissue Sarcoma | LBXCOR1 | 0.07 | 0.03 | blup | 57 | 0.03 | 6.3e-03 | -8.3 | 5.4 | 6.8e-08 | -0.26 | 0.04 | 0.09 | TRUE |
29 | The Cancer Genome Atlas | Thyroid Carcinoma | LBXCOR1 | 0.06 | 0.01 | lasso | 3 | 0.03 | 7.0e-04 | -8.4 | 7.4 | 1.5e-13 | -0.65 | 0.10 | 0.48 | FALSE |
30 | The Cancer Genome Atlas | Thyroid Carcinoma | MAP2K5 | 0.10 | 0.06 | lasso | 5 | 0.04 | 6.1e-05 | -7.7 | 8.2 | 2.4e-16 | -0.83 | 0.59 | 0.37 | FALSE |