Best TWAS P=1.8e-10 · Best GWAS P=5.18e-08 conditioned to 0.582
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | HYAL1 | 0.09 | 0.06 | lasso | 1 | 0.05 | 4.3e-05 | 5.2 | 5.2 | 2.0e-07 | 0.93 | 0.01 | 0.98 | FALSE |
2 | GTEx | Artery Aorta | SEMA3B-AS1 | 0.67 | 0.00 | enet | 61 | 0.12 | 5.0e-07 | 1.1 | 6.4 | 1.8e-10 | 0.31 | 0.07 | 0.45 | TRUE |
3 | GTEx | Cells Transformed fibroblasts | SEMA3B-AS1 | 0.15 | 0.01 | enet | 3 | 0.00 | 3.9e-01 | 5.1 | 5.4 | 7.3e-08 | 0.98 | 0.02 | 0.95 | FALSE |
4 | GTEx | Esophagus Gastroesophageal Junction | HYAL1 | 0.30 | 0.13 | lasso | 9 | 0.10 | 2.1e-04 | 5.2 | 5.3 | 1.0e-07 | 0.95 | 0.01 | 0.97 | FALSE |
5 | GTEx | Esophagus Muscularis | HYAL1 | 0.11 | 0.08 | lasso | 5 | 0.05 | 3.3e-04 | 5.2 | 5.3 | 1.1e-07 | 0.96 | 0.01 | 0.98 | FALSE |
6 | GTEx | Muscle Skeletal | HYAL1 | 0.08 | 0.08 | lasso | 3 | 0.06 | 7.6e-07 | 5.2 | 5.2 | 1.7e-07 | 0.96 | 0.01 | 0.99 | FALSE |
7 | GTEx | Nerve Tibial | U73166.2 | 0.07 | 0.03 | lasso | 3 | 0.03 | 2.8e-03 | 5.3 | -5.2 | 1.6e-07 | -0.95 | 0.01 | 0.97 | FALSE |
8 | METSIM | Adipose | CYB561D2 | 0.09 | 0.08 | lasso | 5 | 0.07 | 3.8e-10 | 5.2 | -5.4 | 8.2e-08 | -0.94 | 0.02 | 0.98 | TRUE |
9 | ROSMAP | Brain Pre-frontal Cortex | CACNA2D2 | 0.05 | 0.02 | lasso | 3 | 0.02 | 3.6e-03 | 5.2 | -5.3 | 1.4e-07 | -0.96 | 0.01 | 0.97 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | SEMA3B | 0.05 | 0.03 | lasso | 6 | 0.02 | 8.3e-04 | 5.2 | 5.3 | 9.4e-08 | 0.97 | 0.01 | 0.99 | FALSE |
11 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | C3orf45 | 0.07 | 0.05 | enet | 4 | 0.05 | 2.9e-03 | 5.2 | -5.1 | 2.7e-07 | -0.88 | 0.00 | 0.88 | FALSE |
12 | The Cancer Genome Atlas | Prostate Adenocarcinoma | HYAL1 | 0.04 | 0.00 | blup | 13 | 0.01 | 1.8e-02 | 5.2 | 5.2 | 1.6e-07 | 0.72 | 0.00 | 0.78 | FALSE |