Best TWAS P=6.57e-12 · Best GWAS P=2.7e-10 conditioned to 0.0204
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Visceral Omentum | NCOA1 | 0.11 | 0.02 | enet | 17 | 0.02 | 2.1e-02 | -6.0 | -6.9 | 6.6e-12 | 0.73 | 0.02 | 0.90 | TRUE |
| 2 | GTEx | Artery Aorta | NCOA1 | 0.15 | 0.00 | enet | 15 | 0.01 | 1.4e-01 | -4.2 | -5.5 | 3.9e-08 | 0.60 | 0.03 | 0.57 | FALSE |
| 3 | GTEx | Esophagus Muscularis | NCOA1 | 0.11 | 0.01 | enet | 9 | 0.01 | 5.8e-02 | -6.3 | -5.3 | 8.9e-08 | 0.83 | 0.01 | 0.85 | FALSE |
| 4 | ROSMAP | Brain Pre-frontal Cortex | EFR3B | 0.07 | 0.03 | bslmm | 348 | 0.03 | 3.5e-05 | 4.3 | -6.3 | 2.6e-10 | 0.34 | 0.18 | 0.35 | TRUE |
| 5 | YFS | Blood | CENPO | 0.09 | 0.06 | lasso | 6 | 0.07 | 6.7e-21 | -6.0 | 5.9 | 4.7e-09 | -0.58 | 0.03 | 0.97 | FALSE |
| 6 | The Cancer Genome Atlas | Glioblastoma Multiforme | ADCY3 | 0.36 | 0.14 | enet | 7 | 0.13 | 8.9e-05 | -6.1 | 6.1 | 1.2e-09 | -0.90 | 0.00 | 0.94 | FALSE |
| 7 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADCY3 | 0.08 | 0.03 | enet | 16 | 0.03 | 1.5e-04 | -5.7 | 5.6 | 1.7e-08 | -0.51 | 0.01 | 0.71 | FALSE |
| 8 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EFR3B | 0.26 | 0.01 | lasso | 4 | 0.05 | 3.8e-03 | -6.3 | -6.0 | 1.6e-09 | 0.87 | 0.00 | 0.92 | FALSE |
| 9 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ADCY3 | 0.09 | 0.02 | enet | 11 | 0.04 | 3.2e-05 | -6.1 | 6.2 | 7.6e-10 | -0.79 | 0.00 | 0.99 | FALSE |