[Hub]/) : Traits : Mean time to correctly identify matches :

chr1:204,982,713-206,329,620

Best TWAS P=3.15e-11 · Best GWAS P=6.7e-10 conditioned to 0.34

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 CommonMind Brain Pre-frontal Cortex PM20D1 0.27 0.41 enet 15 0.41 7.8e-54 6.0 6.0 1.6e-09 -0.75 0.00 1.00 FALSE
2 CommonMind Brain Pre-frontal Cortex SLC26A9 0.13 0.16 lasso 3 0.16 3.1e-19 6.0 6.0 1.9e-09 -0.76 0.00 1.00 FALSE
3 GTEx Adipose Visceral Omentum RAB7L1 0.17 0.08 enet 15 0.10 1.2e-05 -3.6 5.1 2.8e-07 -0.54 0.48 0.48 FALSE
4 GTEx Artery Tibial NUCKS1 0.13 0.03 lasso 2 0.01 4.0e-02 5.7 -5.8 7.0e-09 0.70 0.03 0.92 FALSE
5 GTEx Brain Cerebellum NUCKS1 0.22 0.13 lasso 3 0.08 2.0e-03 5.7 -5.2 1.7e-07 0.72 0.07 0.77 FALSE
6 GTEx Esophagus Mucosa RAB7L1 0.26 0.11 enet 34 0.18 4.5e-12 -4.1 5.8 7.5e-09 -0.62 0.04 0.96 FALSE
7 GTEx Lung RAB7L1 0.34 0.19 enet 53 0.31 7.5e-24 -3.5 5.3 1.1e-07 -0.57 0.32 0.68 FALSE
8 GTEx Nerve Tibial SLC41A1 0.12 0.02 lasso 4 0.05 2.5e-04 6.0 5.2 1.7e-07 -0.70 0.03 0.96 FALSE
9 GTEx Pancreas SLC41A1 0.24 0.21 lasso 5 0.19 1.4e-08 6.0 6.0 1.5e-09 -0.77 0.00 1.00 FALSE
10 GTEx Prostate NUCKS1 0.38 0.23 lasso 8 0.32 7.5e-09 -6.1 6.3 2.7e-10 -0.95 0.01 0.98 FALSE
11 GTEx Testis NUCKS1 0.16 0.16 enet 15 0.16 1.3e-07 5.1 -5.2 2.4e-07 0.74 0.08 0.92 FALSE
12 GTEx Thyroid NUCKS1 0.26 0.16 lasso 6 0.19 1.8e-14 4.9 -5.1 2.9e-07 0.64 0.09 0.91 FALSE
13 METSIM Adipose NUCKS1 0.05 0.02 lasso 6 0.01 4.3e-03 5.1 -5.2 1.8e-07 0.70 0.09 0.86 FALSE
14 METSIM Adipose PM20D1 0.25 0.30 bslmm 377 0.31 8.4e-47 6.0 -5.6 2.2e-08 0.83 0.00 1.00 FALSE
15 METSIM Adipose SLC41A1 0.07 0.08 lasso 7 0.08 1.9e-11 -6.1 6.0 1.8e-09 -0.94 0.00 1.00 FALSE
16 YFS Blood NUCKS1 0.15 0.24 lasso 4 0.25 1.4e-80 4.9 -5.2 2.3e-07 0.66 0.66 0.34 FALSE
17 YFS Blood SLC41A1 0.06 0.05 enet 15 0.05 2.6e-17 5.7 5.4 5.8e-08 -0.73 0.01 0.99 FALSE
18 The Cancer Genome Atlas Bladder Urothelial Carcinoma PM20D1 0.22 0.26 lasso 5 0.26 1.7e-22 5.7 -6.2 4.8e-10 0.85 0.01 0.99 FALSE
19 The Cancer Genome Atlas Breast Invasive Carcinoma PM20D1 0.24 0.37 lasso 5 0.39 4.9e-85 6.0 -6.3 3.6e-10 0.83 0.00 1.00 FALSE
20 The Cancer Genome Atlas Cervical Squamous Cell Carcinoma PM20D1 0.18 0.19 blup 47 0.18 1.9e-09 6.0 -5.1 2.8e-07 0.74 0.00 1.00 FALSE
21 The Cancer Genome Atlas Colon Adenocarcinoma PM20D1 0.26 0.13 enet 14 0.16 9.7e-10 -6.1 -5.8 5.4e-09 0.86 0.00 1.00 FALSE
22 The Cancer Genome Atlas Head and Neck Squamous Cell Carcinoma PM20D1 0.19 0.25 lasso 5 0.25 3.0e-28 6.0 -6.3 3.0e-10 0.86 0.01 0.99 FALSE
23 The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma PM20D1 0.29 0.35 enet 18 0.35 5.1e-41 6.0 -6.6 3.2e-11 0.86 0.00 1.00 TRUE
24 The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma RAB7L1 0.09 0.08 enet 11 0.08 1.7e-09 -4.3 5.1 2.9e-07 -0.64 0.61 0.39 FALSE
25 The Cancer Genome Atlas Kidney Renal Papillary Cell Carcinoma PM20D1 0.19 0.19 enet 4 0.19 4.5e-11 6.0 -6.1 8.4e-10 0.81 0.01 0.99 FALSE
26 The Cancer Genome Atlas Brain Lower Grade Glioma PM20D1 0.41 0.43 enet 20 0.44 9.2e-55 6.0 -5.8 6.0e-09 0.79 0.00 1.00 FALSE
27 The Cancer Genome Atlas Lung Adenocarcinoma PM20D1 0.31 0.39 enet 16 0.41 5.1e-52 6.0 -6.3 3.3e-10 0.82 0.01 0.99 FALSE
28 The Cancer Genome Atlas Lung Adenocarcinoma RAB7L1 0.02 0.02 enet 5 0.03 4.6e-04 -3.9 5.7 1.6e-08 -0.83 0.01 0.86 FALSE
29 The Cancer Genome Atlas Lung Squamous Cell Carcinoma PM20D1 0.26 0.34 lasso 3 0.34 1.9e-40 6.0 -6.3 2.3e-10 0.88 0.00 1.00 FALSE
30 The Cancer Genome Atlas Ovarian Serous Cystadenocarcinoma PM20D1 0.12 0.13 blup 47 0.12 9.1e-09 6.0 -6.0 2.2e-09 0.76 0.00 1.00 FALSE
31 The Cancer Genome Atlas Ovarian Serous Cystadenocarcinoma RAB7L1 0.06 0.06 blup 46 0.06 5.2e-05 4.9 5.7 1.5e-08 -0.82 0.05 0.93 FALSE
32 The Cancer Genome Atlas Pancreatic Adenocarcinoma PM20D1 0.32 0.34 lasso 2 0.34 9.7e-15 5.7 -5.8 5.9e-09 0.74 0.01 0.99 FALSE
33 The Cancer Genome Atlas Pheochromocytoma and Paraganglioma PM20D1 0.34 0.13 enet 20 0.21 9.7e-09 -5.0 -5.4 6.3e-08 0.82 0.01 0.99 FALSE
34 The Cancer Genome Atlas Prostate Adenocarcinoma PM20D1 0.16 0.14 enet 15 0.16 5.6e-16 6.0 -6.3 2.7e-10 0.90 0.00 1.00 FALSE
35 The Cancer Genome Atlas Soft Tissue Sarcoma PM20D1 0.23 0.24 lasso 4 0.24 1.2e-14 6.0 -6.3 3.3e-10 0.83 0.00 1.00 FALSE
36 The Cancer Genome Atlas Skin Cutaneous Melanoma PM20D1 0.17 0.11 lasso 3 0.07 5.0e-03 6.0 -6.1 1.1e-09 0.78 0.01 0.82 FALSE
37 The Cancer Genome Atlas Stomach Adenocarcinoma PM20D1 0.09 0.11 enet 6 0.10 1.3e-07 -6.2 -6.2 5.1e-10 0.96 0.00 1.00 FALSE
38 The Cancer Genome Atlas Stomach Adenocarcinoma RAB7L1 0.07 0.04 blup 46 0.07 1.2e-05 5.7 5.3 1.1e-07 -0.65 0.03 0.94 FALSE
39 The Cancer Genome Atlas Testicular Germ Cell Tumors PM20D1 0.42 0.34 lasso 3 0.34 6.9e-13 6.0 -5.8 7.1e-09 0.61 0.01 0.99 FALSE
40 The Cancer Genome Atlas Thyroid Carcinoma PM20D1 0.26 0.40 lasso 4 0.41 2.0e-42 6.0 -6.1 8.6e-10 0.82 0.00 1.00 FALSE
41 The Cancer Genome Atlas Thyroid Carcinoma RAB7L1 0.13 0.17 enet 15 0.21 3.6e-20 -4.1 5.5 5.2e-08 -0.71 0.24 0.76 FALSE
42 The Cancer Genome Atlas Uterine Corpus Endometrial Carcinoma PM20D1 0.19 0.09 lasso 4 0.12 4.2e-04 5.7 -5.8 7.7e-09 0.77 0.01 0.83 FALSE