[Hub]/) : Traits : Mean time to correctly identify matches : ← →

chr1:204,982,713-206,329,620

Best TWAS P=3.15e-11 · Best GWAS P=6.7e-10 conditioned to 0.34

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	PM20D1	0.27	0.41	enet	15	0.41	7.8e-54	6.0	6.0	1.6e-09	-0.75	0.00	1.00	FALSE
2	CommonMind	Brain Pre-frontal Cortex	SLC26A9	0.13	0.16	lasso	3	0.16	3.1e-19	6.0	6.0	1.9e-09	-0.76	0.00	1.00	FALSE
3	GTEx	Adipose Visceral Omentum	RAB7L1	0.17	0.08	enet	15	0.10	1.2e-05	-3.6	5.1	2.8e-07	-0.54	0.48	0.48	FALSE
4	GTEx	Artery Tibial	NUCKS1	0.13	0.03	lasso	2	0.01	4.0e-02	5.7	-5.8	7.0e-09	0.70	0.03	0.92	FALSE
5	GTEx	Brain Cerebellum	NUCKS1	0.22	0.13	lasso	3	0.08	2.0e-03	5.7	-5.2	1.7e-07	0.72	0.07	0.77	FALSE
6	GTEx	Esophagus Mucosa	RAB7L1	0.26	0.11	enet	34	0.18	4.5e-12	-4.1	5.8	7.5e-09	-0.62	0.04	0.96	FALSE
7	GTEx	Lung	RAB7L1	0.34	0.19	enet	53	0.31	7.5e-24	-3.5	5.3	1.1e-07	-0.57	0.32	0.68	FALSE
8	GTEx	Nerve Tibial	SLC41A1	0.12	0.02	lasso	4	0.05	2.5e-04	6.0	5.2	1.7e-07	-0.70	0.03	0.96	FALSE
9	GTEx	Pancreas	SLC41A1	0.24	0.21	lasso	5	0.19	1.4e-08	6.0	6.0	1.5e-09	-0.77	0.00	1.00	FALSE
10	GTEx	Prostate	NUCKS1	0.38	0.23	lasso	8	0.32	7.5e-09	-6.1	6.3	2.7e-10	-0.95	0.01	0.98	FALSE
11	GTEx	Testis	NUCKS1	0.16	0.16	enet	15	0.16	1.3e-07	5.1	-5.2	2.4e-07	0.74	0.08	0.92	FALSE
12	GTEx	Thyroid	NUCKS1	0.26	0.16	lasso	6	0.19	1.8e-14	4.9	-5.1	2.9e-07	0.64	0.09	0.91	FALSE
13	METSIM	Adipose	NUCKS1	0.05	0.02	lasso	6	0.01	4.3e-03	5.1	-5.2	1.8e-07	0.70	0.09	0.86	FALSE
14	METSIM	Adipose	PM20D1	0.25	0.30	bslmm	377	0.31	8.4e-47	6.0	-5.6	2.2e-08	0.83	0.00	1.00	FALSE
15	METSIM	Adipose	SLC41A1	0.07	0.08	lasso	7	0.08	1.9e-11	-6.1	6.0	1.8e-09	-0.94	0.00	1.00	FALSE
16	YFS	Blood	NUCKS1	0.15	0.24	lasso	4	0.25	1.4e-80	4.9	-5.2	2.3e-07	0.66	0.66	0.34	FALSE
17	YFS	Blood	SLC41A1	0.06	0.05	enet	15	0.05	2.6e-17	5.7	5.4	5.8e-08	-0.73	0.01	0.99	FALSE
18	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	PM20D1	0.22	0.26	lasso	5	0.26	1.7e-22	5.7	-6.2	4.8e-10	0.85	0.01	0.99	FALSE
19	The Cancer Genome Atlas	Breast Invasive Carcinoma	PM20D1	0.24	0.37	lasso	5	0.39	4.9e-85	6.0	-6.3	3.6e-10	0.83	0.00	1.00	FALSE
20	The Cancer Genome Atlas	Cervical Squamous Cell Carcinoma	PM20D1	0.18	0.19	blup	47	0.18	1.9e-09	6.0	-5.1	2.8e-07	0.74	0.00	1.00	FALSE
21	The Cancer Genome Atlas	Colon Adenocarcinoma	PM20D1	0.26	0.13	enet	14	0.16	9.7e-10	-6.1	-5.8	5.4e-09	0.86	0.00	1.00	FALSE
22	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	PM20D1	0.19	0.25	lasso	5	0.25	3.0e-28	6.0	-6.3	3.0e-10	0.86	0.01	0.99	FALSE
23	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	PM20D1	0.29	0.35	enet	18	0.35	5.1e-41	6.0	-6.6	3.2e-11	0.86	0.00	1.00	TRUE
24	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	RAB7L1	0.09	0.08	enet	11	0.08	1.7e-09	-4.3	5.1	2.9e-07	-0.64	0.61	0.39	FALSE
25	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	PM20D1	0.19	0.19	enet	4	0.19	4.5e-11	6.0	-6.1	8.4e-10	0.81	0.01	0.99	FALSE
26	The Cancer Genome Atlas	Brain Lower Grade Glioma	PM20D1	0.41	0.43	enet	20	0.44	9.2e-55	6.0	-5.8	6.0e-09	0.79	0.00	1.00	FALSE
27	The Cancer Genome Atlas	Lung Adenocarcinoma	PM20D1	0.31	0.39	enet	16	0.41	5.1e-52	6.0	-6.3	3.3e-10	0.82	0.01	0.99	FALSE
28	The Cancer Genome Atlas	Lung Adenocarcinoma	RAB7L1	0.02	0.02	enet	5	0.03	4.6e-04	-3.9	5.7	1.6e-08	-0.83	0.01	0.86	FALSE
29	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	PM20D1	0.26	0.34	lasso	3	0.34	1.9e-40	6.0	-6.3	2.3e-10	0.88	0.00	1.00	FALSE
30	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	PM20D1	0.12	0.13	blup	47	0.12	9.1e-09	6.0	-6.0	2.2e-09	0.76	0.00	1.00	FALSE
31	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	RAB7L1	0.06	0.06	blup	46	0.06	5.2e-05	4.9	5.7	1.5e-08	-0.82	0.05	0.93	FALSE
32	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	PM20D1	0.32	0.34	lasso	2	0.34	9.7e-15	5.7	-5.8	5.9e-09	0.74	0.01	0.99	FALSE
33	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	PM20D1	0.34	0.13	enet	20	0.21	9.7e-09	-5.0	-5.4	6.3e-08	0.82	0.01	0.99	FALSE
34	The Cancer Genome Atlas	Prostate Adenocarcinoma	PM20D1	0.16	0.14	enet	15	0.16	5.6e-16	6.0	-6.3	2.7e-10	0.90	0.00	1.00	FALSE
35	The Cancer Genome Atlas	Soft Tissue Sarcoma	PM20D1	0.23	0.24	lasso	4	0.24	1.2e-14	6.0	-6.3	3.3e-10	0.83	0.00	1.00	FALSE
36	The Cancer Genome Atlas	Skin Cutaneous Melanoma	PM20D1	0.17	0.11	lasso	3	0.07	5.0e-03	6.0	-6.1	1.1e-09	0.78	0.01	0.82	FALSE
37	The Cancer Genome Atlas	Stomach Adenocarcinoma	PM20D1	0.09	0.11	enet	6	0.10	1.3e-07	-6.2	-6.2	5.1e-10	0.96	0.00	1.00	FALSE
38	The Cancer Genome Atlas	Stomach Adenocarcinoma	RAB7L1	0.07	0.04	blup	46	0.07	1.2e-05	5.7	5.3	1.1e-07	-0.65	0.03	0.94	FALSE
39	The Cancer Genome Atlas	Testicular Germ Cell Tumors	PM20D1	0.42	0.34	lasso	3	0.34	6.9e-13	6.0	-5.8	7.1e-09	0.61	0.01	0.99	FALSE
40	The Cancer Genome Atlas	Thyroid Carcinoma	PM20D1	0.26	0.40	lasso	4	0.41	2.0e-42	6.0	-6.1	8.6e-10	0.82	0.00	1.00	FALSE
41	The Cancer Genome Atlas	Thyroid Carcinoma	RAB7L1	0.13	0.17	enet	15	0.21	3.6e-20	-4.1	5.5	5.2e-08	-0.71	0.24	0.76	FALSE
42	The Cancer Genome Atlas	Uterine Corpus Endometrial Carcinoma	PM20D1	0.19	0.09	lasso	4	0.12	4.2e-04	5.7	-5.8	7.7e-09	0.77	0.01	0.83	FALSE