Best TWAS P=3.97e-12 · Best GWAS P=3.45e-12 conditioned to 0.264
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Cells Transformed fibroblasts | DHDDS | 0.13 | 0.09 | lasso | 4 | 0.08 | 1.0e-06 | 5.0 | -5.2 | 1.8e-07 | -0.25 | 0.98 | 0.00 | FALSE |
2 | GTEx | Esophagus Mucosa | DHDDS | 0.11 | 0.06 | lasso | 4 | 0.04 | 6.6e-04 | -6.2 | -6.9 | 4.2e-12 | -0.25 | 0.30 | 0.48 | TRUE |
3 | GTEx | Esophagus Mucosa | PDIK1L | 0.10 | 0.09 | lasso | 6 | 0.09 | 8.8e-07 | 6.3 | -6.4 | 1.4e-10 | -0.83 | 0.03 | 0.97 | FALSE |
4 | GTEx | Nerve Tibial | PDIK1L | 0.09 | 0.01 | enet | 10 | 0.03 | 2.2e-03 | 6.4 | -6.4 | 1.7e-10 | -0.63 | 0.09 | 0.88 | FALSE |
5 | GTEx | Pancreas | CNKSR1 | 0.20 | 0.03 | enet | 20 | 0.04 | 7.3e-03 | 6.3 | -5.7 | 1.5e-08 | -0.48 | 0.09 | 0.32 | FALSE |
6 | GTEx | Pituitary | CNKSR1 | 0.38 | 0.16 | lasso | 7 | 0.15 | 1.4e-04 | 5.3 | -6.1 | 8.3e-10 | -0.67 | 0.17 | 0.51 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | CNKSR1 | 0.15 | 0.10 | lasso | 7 | 0.09 | 1.0e-05 | 5.3 | -6.3 | 3.3e-10 | -0.65 | 0.40 | 0.58 | FALSE |
8 | GTEx | Skin Not Sun Exposed Suprapubic | PDIK1L | 0.22 | 0.05 | enet | 37 | 0.11 | 8.3e-07 | 6.3 | -5.8 | 7.9e-09 | -0.74 | 0.07 | 0.93 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | PDIK1L | 0.14 | 0.05 | enet | 23 | 0.12 | 3.1e-10 | 6.3 | -5.9 | 4.4e-09 | -0.71 | 0.10 | 0.90 | FALSE |
10 | GTEx | Thyroid | CNKSR1 | 0.10 | 0.04 | lasso | 7 | 0.03 | 2.1e-03 | 6.2 | -6.6 | 3.8e-11 | -0.57 | 0.06 | 0.92 | FALSE |
11 | GTEx | Thyroid | SEPN1 | 0.10 | 0.03 | lasso | 3 | 0.04 | 7.0e-04 | -3.7 | -5.5 | 4.1e-08 | -0.32 | 0.86 | 0.04 | FALSE |
12 | METSIM | Adipose | RPS6KA1 | 0.04 | 0.01 | bslmm | 367 | 0.03 | 3.9e-05 | 5.2 | 5.1 | 2.7e-07 | 0.46 | 0.80 | 0.06 | FALSE |
13 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | TRIM63 | 0.03 | 0.02 | blup | 33 | 0.02 | 4.6e-03 | 6.4 | 6.9 | 4.0e-12 | 0.86 | 0.02 | 0.69 | FALSE |
14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PDIK1L | 0.02 | 0.01 | blup | 37 | 0.02 | 6.1e-05 | 6.3 | -5.4 | 5.9e-08 | -0.72 | 0.02 | 0.94 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TRIM63 | 0.15 | 0.16 | lasso | 2 | 0.16 | 2.3e-32 | 6.4 | 6.4 | 1.8e-10 | 0.80 | 0.06 | 0.94 | FALSE |
16 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | TRIM63 | 0.14 | 0.15 | lasso | 1 | 0.14 | 2.2e-07 | 6.3 | 6.3 | 2.7e-10 | 0.80 | 0.05 | 0.94 | FALSE |
17 | The Cancer Genome Atlas | Colon Adenocarcinoma | TRIM63 | 0.08 | 0.10 | lasso | 4 | 0.10 | 3.7e-06 | 6.4 | 6.8 | 1.5e-11 | 0.89 | 0.01 | 0.99 | FALSE |
18 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PDIK1L | 0.02 | 0.02 | blup | 37 | 0.02 | 2.8e-03 | 6.3 | -6.2 | 4.8e-10 | -0.74 | 0.01 | 0.83 | FALSE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SLC30A2 | 0.03 | 0.02 | lasso | 3 | 0.01 | 1.1e-02 | 5.3 | -6.4 | 2.1e-10 | -0.79 | 0.01 | 0.93 | FALSE |
20 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TRIM63 | 0.11 | 0.11 | enet | 4 | 0.12 | 9.0e-14 | 6.4 | 5.7 | 9.6e-09 | 0.79 | 0.06 | 0.94 | FALSE |
21 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PDIK1L | 0.03 | 0.01 | blup | 37 | 0.02 | 2.6e-03 | 6.1 | -5.7 | 1.2e-08 | -0.64 | 0.01 | 0.54 | FALSE |
22 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TRIM63 | 0.29 | 0.33 | enet | 20 | 0.33 | 2.5e-38 | 6.4 | 6.9 | 4.0e-12 | 0.83 | 0.06 | 0.94 | TRUE |
23 | The Cancer Genome Atlas | Lung Adenocarcinoma | TRIM63 | 0.14 | 0.20 | enet | 7 | 0.21 | 9.4e-24 | 6.3 | 6.7 | 2.6e-11 | 0.90 | 0.06 | 0.94 | FALSE |
24 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PDIK1L | 0.02 | 0.00 | blup | 37 | 0.02 | 1.2e-03 | 2.8 | -6.0 | 1.5e-09 | -0.79 | 0.02 | 0.73 | FALSE |
25 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TRIM63 | 0.16 | 0.11 | lasso | 1 | 0.10 | 2.0e-11 | 6.4 | 6.4 | 2.1e-10 | 0.80 | 0.06 | 0.94 | FALSE |
26 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | TRIM63 | 0.14 | 0.18 | lasso | 7 | 0.15 | 3.0e-10 | 6.3 | 6.4 | 1.4e-10 | 0.86 | 0.02 | 0.98 | FALSE |
27 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | RPS6KA1 | 0.11 | 0.05 | lasso | 6 | 0.07 | 8.0e-04 | -5.8 | 6.6 | 5.6e-11 | 0.14 | 0.01 | 0.87 | FALSE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PDIK1L | 0.03 | 0.03 | blup | 37 | 0.02 | 7.0e-03 | -2.6 | -5.1 | 2.6e-07 | -0.67 | 0.03 | 0.26 | FALSE |
29 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SH3BGRL3 | 0.05 | 0.03 | lasso | 2 | 0.03 | 9.3e-04 | 5.4 | 6.1 | 7.9e-10 | 0.45 | 0.00 | 0.94 | FALSE |
30 | The Cancer Genome Atlas | Rectum Adenocarcinoma | TRIM63 | 0.28 | 0.22 | lasso | 3 | 0.20 | 1.7e-05 | 5.3 | 6.1 | 9.2e-10 | 0.74 | 0.03 | 0.84 | FALSE |
31 | The Cancer Genome Atlas | Thyroid Carcinoma | TRIM63 | 0.18 | 0.26 | enet | 7 | 0.26 | 3.0e-25 | 6.3 | 6.6 | 4.5e-11 | 0.84 | 0.07 | 0.93 | FALSE |
32 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | TRIM63 | 0.19 | 0.07 | blup | 33 | 0.14 | 1.3e-04 | 6.4 | 6.3 | 2.7e-10 | 0.84 | 0.01 | 0.98 | FALSE |