Best TWAS P=1.39e-09 · Best GWAS P=9.24e-10 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FAM180B | 0.07 | 0.08 | lasso | 3 | 0.08 | 9.1e-10 | -6.0 | -5.6 | 2.2e-08 | -0.24 | 0.02 | 0.98 | FALSE |
2 | GTEx | Adipose Subcutaneous | ACP2 | 0.08 | 0.03 | enet | 18 | 0.03 | 3.5e-03 | 4.4 | -5.2 | 1.7e-07 | -0.49 | 0.20 | 0.45 | TRUE |
3 | GTEx | Adipose Subcutaneous | C1QTNF4 | 0.16 | 0.22 | lasso | 4 | 0.22 | 2.5e-18 | -6.0 | 5.7 | 9.4e-09 | 0.24 | 0.00 | 1.00 | FALSE |
4 | GTEx | Artery Aorta | C1QTNF4 | 0.09 | 0.10 | lasso | 1 | 0.08 | 3.2e-05 | -6.0 | 6.0 | 2.3e-09 | 0.27 | 0.00 | 0.99 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | ACP2 | 0.29 | 0.05 | enet | 16 | 0.12 | 5.9e-04 | 5.1 | -5.5 | 3.6e-08 | -0.84 | 0.03 | 0.72 | FALSE |
6 | GTEx | Brain Cortex | MTCH2 | 0.21 | 0.19 | lasso | 6 | 0.16 | 4.0e-05 | -5.4 | -5.1 | 3.0e-07 | -0.26 | 0.07 | 0.84 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | PSMC3 | 0.07 | 0.00 | enet | 13 | 0.02 | 2.3e-02 | 4.0 | -5.6 | 2.6e-08 | -0.34 | 0.03 | 0.75 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | C1QTNF4 | 0.13 | 0.11 | enet | 19 | 0.12 | 5.2e-09 | -5.4 | 5.2 | 1.5e-07 | 0.30 | 0.02 | 0.98 | TRUE |
9 | GTEx | Cells Transformed fibroblasts | NDUFS3 | 0.08 | 0.01 | lasso | 2 | 0.01 | 3.3e-02 | -6.0 | 6.0 | 2.7e-09 | 0.23 | 0.01 | 0.97 | FALSE |
10 | GTEx | Colon Transverse | C1QTNF4 | 0.07 | 0.02 | lasso | 6 | 0.03 | 2.0e-02 | -6.0 | 6.0 | 2.7e-09 | 0.25 | 0.01 | 0.96 | FALSE |
11 | GTEx | Esophagus Mucosa | C1QTNF4 | 0.10 | 0.11 | lasso | 1 | 0.10 | 5.0e-07 | -6.0 | 6.0 | 2.3e-09 | 0.27 | 0.00 | 1.00 | FALSE |
12 | GTEx | Esophagus Muscularis | C1QTNF4 | 0.10 | 0.05 | enet | 23 | 0.06 | 1.4e-04 | -6.0 | 5.7 | 9.7e-09 | 0.19 | 0.01 | 0.99 | FALSE |
13 | GTEx | Heart Atrial Appendage | C1QTNF4 | 0.26 | 0.14 | lasso | 9 | 0.17 | 3.9e-08 | -6.0 | 5.6 | 1.7e-08 | 0.20 | 0.01 | 0.99 | FALSE |
14 | GTEx | Heart Left Ventricle | MADD | 0.14 | 0.01 | enet | 17 | 0.05 | 7.0e-04 | 4.0 | -5.9 | 3.1e-09 | -0.57 | 0.07 | 0.86 | FALSE |
15 | GTEx | Heart Left Ventricle | C1QTNF4 | 0.10 | 0.11 | lasso | 1 | 0.09 | 1.1e-05 | -6.0 | 6.0 | 2.3e-09 | 0.27 | 0.00 | 0.99 | FALSE |
16 | GTEx | Heart Left Ventricle | ARHGAP1 | 0.06 | 0.03 | lasso | 2 | 0.02 | 2.1e-02 | 6.1 | -5.6 | 2.0e-08 | -0.96 | 0.02 | 0.90 | TRUE |
17 | GTEx | Lung | C1QTNF4 | 0.18 | 0.15 | lasso | 6 | 0.13 | 3.2e-10 | -4.7 | 5.4 | 8.3e-08 | 0.22 | 0.06 | 0.94 | FALSE |
18 | GTEx | Muscle Skeletal | MTCH2 | 0.05 | 0.03 | enet | 15 | 0.04 | 1.5e-04 | -4.7 | -5.7 | 9.8e-09 | -0.37 | 0.04 | 0.95 | FALSE |
19 | GTEx | Muscle Skeletal | C1QTNF4 | 0.09 | 0.14 | lasso | 3 | 0.13 | 9.9e-13 | -6.0 | 6.0 | 1.9e-09 | 0.26 | 0.00 | 1.00 | FALSE |
20 | GTEx | Nerve Tibial | C1QTNF4 | 0.20 | 0.23 | enet | 12 | 0.23 | 1.7e-16 | -6.0 | 5.7 | 1.2e-08 | 0.34 | 0.00 | 1.00 | FALSE |
21 | GTEx | Skin Sun Exposed Lower leg | C1QTNF4 | 0.25 | 0.22 | lasso | 12 | 0.23 | 4.2e-19 | -6.0 | 5.4 | 6.5e-08 | 0.16 | 0.00 | 1.00 | FALSE |
22 | GTEx | Spleen | C1QTNF4 | 0.31 | 0.28 | enet | 29 | 0.34 | 1.8e-09 | -5.4 | 5.5 | 3.5e-08 | 0.12 | 0.04 | 0.95 | FALSE |
23 | GTEx | Whole Blood | C1QTNF4 | 0.09 | 0.05 | lasso | 3 | 0.03 | 1.4e-03 | -5.5 | 5.5 | 3.6e-08 | 0.22 | 0.06 | 0.91 | FALSE |
24 | METSIM | Adipose | C1QTNF4 | 0.24 | 0.31 | lasso | 7 | 0.31 | 1.2e-46 | -5.3 | 5.4 | 8.5e-08 | 0.23 | 0.09 | 0.91 | FALSE |
25 | NTR | Blood | DDB2 | 0.01 | 0.00 | lasso | 7 | 0.01 | 2.2e-03 | 5.6 | -5.3 | 1.0e-07 | -0.91 | 0.04 | 0.89 | FALSE |
26 | NTR | Blood | MTCH2 | 0.02 | 0.04 | lasso | 1 | 0.04 | 1.3e-11 | -5.4 | 5.4 | 5.8e-08 | 0.22 | 0.07 | 0.93 | FALSE |
27 | ROSMAP | Brain Pre-frontal Cortex | MTCH2 | 0.35 | 0.40 | enet | 9 | 0.40 | 4.7e-56 | -5.3 | -5.5 | 3.0e-08 | -0.22 | 0.08 | 0.92 | FALSE |
28 | ROSMAP | Brain Pre-frontal Cortex | ACP2 | 0.03 | 0.00 | blup | 295 | 0.02 | 1.5e-03 | -4.7 | -5.9 | 2.8e-09 | -0.64 | 0.18 | 0.59 | TRUE |
29 | ROSMAP | Brain Pre-frontal Cortex | C1QTNF4 | 0.05 | 0.06 | blup | 281 | 0.06 | 1.7e-08 | -4.7 | 6.0 | 2.1e-09 | 0.39 | 0.06 | 0.94 | TRUE |
30 | YFS | Blood | PSMC3 | 0.02 | 0.01 | blup | 289 | 0.01 | 2.8e-05 | -6.0 | -5.9 | 4.5e-09 | -0.36 | 0.00 | 0.99 | TRUE |
31 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C1QTNF4 | 0.06 | 0.07 | lasso | 2 | 0.06 | 4.9e-06 | -5.4 | 5.7 | 1.2e-08 | 0.24 | 0.00 | 0.99 | FALSE |
32 | The Cancer Genome Atlas | Colon Adenocarcinoma | C1QTNF4 | 0.12 | 0.12 | lasso | 1 | 0.12 | 1.6e-07 | -6.0 | 6.0 | 2.3e-09 | 0.27 | 0.00 | 1.00 | FALSE |
33 | The Cancer Genome Atlas | Colon Adenocarcinoma | KBTBD4 | 0.14 | 0.01 | blup | 13 | 0.02 | 1.6e-02 | 4.3 | -5.5 | 2.8e-08 | -0.26 | 0.00 | 0.50 | FALSE |
34 | The Cancer Genome Atlas | Esophageal Carcinoma | C1QTNF4 | 0.39 | 0.33 | blup | 15 | 0.35 | 6.1e-12 | -6.0 | 6.1 | 1.4e-09 | 0.25 | 0.00 | 1.00 | TRUE |
35 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | C1QTNF4 | 0.06 | 0.08 | lasso | 3 | 0.08 | 7.5e-09 | -5.3 | 5.3 | 8.6e-08 | 0.21 | 0.02 | 0.98 | FALSE |
36 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C1QTNF4 | 0.12 | 0.14 | enet | 4 | 0.16 | 6.5e-18 | -5.3 | 5.8 | 9.1e-09 | 0.24 | 0.02 | 0.98 | FALSE |
37 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | C1QTNF4 | 0.13 | 0.16 | lasso | 1 | 0.16 | 3.1e-09 | -5.4 | 5.4 | 5.7e-08 | 0.22 | 0.02 | 0.98 | FALSE |
38 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTCH2 | 0.11 | 0.11 | lasso | 2 | 0.10 | 6.4e-12 | -5.3 | -5.3 | 9.3e-08 | -0.21 | 0.02 | 0.98 | FALSE |
39 | The Cancer Genome Atlas | Brain Lower Grade Glioma | PSMC3 | 0.10 | 0.05 | blup | 39 | 0.08 | 3.7e-09 | -4.8 | -5.6 | 2.6e-08 | -0.22 | 0.02 | 0.96 | FALSE |
40 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | C1QTNF4 | 0.19 | 0.19 | lasso | 3 | 0.19 | 3.2e-09 | -5.3 | 5.3 | 9.3e-08 | 0.21 | 0.02 | 0.97 | FALSE |
41 | The Cancer Genome Atlas | Lung Adenocarcinoma | C1QTNF4 | 0.03 | 0.02 | blup | 15 | 0.02 | 1.3e-03 | -6.0 | 6.0 | 1.8e-09 | 0.27 | 0.00 | 0.97 | FALSE |
42 | The Cancer Genome Atlas | Stomach Adenocarcinoma | C1QTNF4 | 0.06 | 0.04 | lasso | 4 | 0.03 | 4.3e-03 | -5.4 | 5.6 | 1.7e-08 | 0.24 | 0.00 | 0.92 | FALSE |
43 | The Cancer Genome Atlas | Thyroid Carcinoma | C1QTNF4 | 0.04 | 0.01 | blup | 15 | 0.03 | 7.9e-04 | -6.0 | 5.5 | 3.9e-08 | 0.37 | 0.00 | 0.94 | FALSE |
44 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | ZNF408 | 0.27 | 0.01 | blup | 27 | 0.09 | 1.5e-03 | 6.0 | -5.1 | 3.0e-07 | -0.81 | 0.00 | 0.79 | FALSE |