Best TWAS P=1.6e-09 · Best GWAS P=4.36e-09 conditioned to 0.325
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ABHD12 | 0.10 | 0.17 | blup | 405 | 0.17 | 1.7e-20 | -5.7 | -5.2 | 1.6e-07 | 0.88 | 0.07 | 0.93 | FALSE |
2 | GTEx | Adipose Subcutaneous | CTD-2514C3.1 | 0.06 | 0.02 | enet | 5 | 0.04 | 6.1e-04 | -3.4 | 5.1 | 3.0e-07 | -0.65 | 0.03 | 0.94 | FALSE |
3 | GTEx | Artery Aorta | PYGB | 0.07 | 0.02 | lasso | 9 | 0.02 | 3.4e-02 | -4.7 | -5.3 | 1.3e-07 | 0.72 | 0.10 | 0.56 | FALSE |
4 | GTEx | Artery Aorta | ABHD12 | 0.06 | 0.03 | enet | 6 | 0.03 | 5.4e-03 | -5.5 | -5.5 | 3.3e-08 | 0.85 | 0.09 | 0.87 | FALSE |
5 | GTEx | Artery Tibial | ABHD12 | 0.12 | 0.12 | enet | 25 | 0.15 | 7.1e-12 | -5.6 | -5.5 | 4.3e-08 | 0.89 | 0.10 | 0.90 | FALSE |
6 | GTEx | Brain Caudate basal ganglia | ABHD12 | 0.09 | 0.05 | enet | 13 | 0.04 | 2.9e-02 | -5.6 | -5.8 | 8.1e-09 | 0.91 | 0.08 | 0.75 | FALSE |
7 | GTEx | Brain Cerebellar Hemisphere | ENTPD6 | 0.22 | 0.26 | lasso | 3 | 0.17 | 3.8e-05 | -5.5 | 5.4 | 5.6e-08 | -0.96 | 0.10 | 0.89 | FALSE |
8 | GTEx | Brain Cortex | ABHD12 | 0.08 | 0.11 | lasso | 8 | 0.09 | 1.4e-03 | -5.6 | -5.4 | 5.7e-08 | 0.88 | 0.07 | 0.74 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | ABHD12 | 0.24 | 0.33 | lasso | 4 | 0.35 | 6.3e-27 | -5.6 | -5.7 | 1.3e-08 | 0.91 | 0.09 | 0.91 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | GINS1 | 0.04 | 0.01 | lasso | 3 | 0.01 | 5.2e-02 | -4.7 | -5.7 | 9.3e-09 | 0.77 | 0.13 | 0.78 | FALSE |
11 | GTEx | Colon Sigmoid | ABHD12 | 0.17 | 0.17 | lasso | 15 | 0.17 | 1.0e-06 | -5.5 | -5.7 | 1.4e-08 | 0.86 | 0.10 | 0.90 | FALSE |
12 | GTEx | Esophagus Gastroesophageal Junction | ABHD12 | 0.15 | 0.14 | lasso | 13 | 0.14 | 7.0e-06 | -5.5 | -5.1 | 2.7e-07 | 0.94 | 0.09 | 0.91 | FALSE |
13 | GTEx | Esophagus Muscularis | ABHD12 | 0.10 | 0.10 | enet | 42 | 0.09 | 4.5e-06 | -5.7 | -5.3 | 9.7e-08 | 0.83 | 0.08 | 0.92 | FALSE |
14 | GTEx | Heart Atrial Appendage | ABHD12 | 0.07 | 0.06 | enet | 16 | 0.06 | 1.0e-03 | -5.8 | -5.8 | 8.9e-09 | 0.92 | 0.08 | 0.91 | FALSE |
15 | GTEx | Heart Left Ventricle | ABHD12 | 0.15 | 0.14 | lasso | 10 | 0.12 | 4.0e-07 | -5.6 | -5.6 | 2.1e-08 | 0.91 | 0.08 | 0.92 | FALSE |
16 | GTEx | Liver | ABHD12 | 0.20 | 0.20 | lasso | 19 | 0.15 | 7.3e-05 | -5.7 | -5.8 | 6.2e-09 | 0.93 | 0.07 | 0.92 | FALSE |
17 | GTEx | Nerve Tibial | ABHD12 | 0.24 | 0.44 | lasso | 11 | 0.44 | 5.1e-34 | -5.7 | 5.5 | 3.3e-08 | -0.92 | 0.07 | 0.93 | FALSE |
18 | GTEx | Ovary | ABHD12 | 0.23 | 0.04 | lasso | 8 | 0.05 | 1.9e-02 | -5.7 | -5.4 | 5.3e-08 | 0.86 | 0.07 | 0.69 | FALSE |
19 | GTEx | Pituitary | ABHD12 | 0.27 | 0.31 | enet | 25 | 0.31 | 1.8e-08 | -5.7 | -5.3 | 1.3e-07 | 0.88 | 0.08 | 0.92 | FALSE |
20 | GTEx | Spleen | PYGB | 0.15 | 0.09 | lasso | 6 | 0.04 | 2.6e-02 | -5.7 | -6.0 | 1.6e-09 | 0.90 | 0.08 | 0.84 | TRUE |
21 | GTEx | Testis | ABHD12 | 0.21 | 0.18 | enet | 25 | 0.23 | 1.1e-10 | -5.6 | -5.1 | 2.8e-07 | 0.87 | 0.08 | 0.92 | FALSE |
22 | GTEx | Thyroid | ABHD12 | 0.05 | 0.04 | lasso | 5 | 0.03 | 3.9e-03 | -5.7 | 5.8 | 7.6e-09 | -0.95 | 0.07 | 0.91 | FALSE |
23 | GTEx | Thyroid | NINL | 0.13 | 0.18 | enet | 17 | 0.20 | 6.2e-15 | 4.5 | 5.9 | 4.7e-09 | -0.80 | 0.40 | 0.60 | FALSE |
24 | GTEx | Thyroid | VN1R108P | 0.05 | 0.01 | lasso | 2 | 0.02 | 1.8e-02 | -4.8 | -5.9 | 3.2e-09 | 0.82 | 0.07 | 0.81 | FALSE |
25 | GTEx | Whole Blood | PYGB | 0.17 | 0.14 | enet | 22 | 0.18 | 2.7e-16 | -5.7 | -5.2 | 2.5e-07 | 0.88 | 0.08 | 0.92 | FALSE |
26 | NTR | Blood | PYGB | 0.07 | 0.10 | enet | 22 | 0.12 | 3.6e-36 | -5.7 | -5.3 | 1.2e-07 | 0.88 | 0.08 | 0.92 | FALSE |
27 | YFS | Blood | ABHD12 | 0.15 | 0.35 | bslmm | 390 | 0.34 | 2.2e-118 | -5.6 | -5.7 | 1.5e-08 | 0.92 | 0.08 | 0.92 | FALSE |
28 | YFS | Blood | PYGB | 0.36 | 0.49 | enet | 50 | 0.56 | 7.4e-226 | -4.5 | -5.3 | 1.2e-07 | 0.87 | 0.30 | 0.70 | FALSE |
29 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ABHD12 | 0.04 | 0.00 | blup | 77 | 0.02 | 6.6e-03 | -5.7 | -5.7 | 9.7e-09 | 0.88 | 0.04 | 0.55 | FALSE |
30 | The Cancer Genome Atlas | Glioblastoma Multiforme | ABHD12 | 0.14 | 0.10 | lasso | 5 | 0.13 | 1.1e-04 | -5.5 | -5.7 | 9.6e-09 | 0.89 | 0.05 | 0.90 | FALSE |
31 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | ABHD12 | 0.04 | 0.03 | blup | 77 | 0.04 | 4.0e-05 | -5.6 | -6.0 | 2.6e-09 | 0.91 | 0.06 | 0.94 | FALSE |
32 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | GINS1 | 0.03 | 0.01 | enet | 13 | 0.02 | 4.3e-03 | -4.8 | -5.6 | 2.0e-08 | 0.79 | 0.03 | 0.66 | FALSE |
33 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ABHD12 | 0.04 | 0.06 | blup | 77 | 0.06 | 2.2e-07 | -5.6 | -5.8 | 8.7e-09 | 0.93 | 0.05 | 0.95 | FALSE |
34 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ABHD12 | 0.07 | 0.05 | blup | 77 | 0.05 | 2.4e-03 | -5.7 | -5.5 | 3.4e-08 | 0.92 | 0.05 | 0.85 | FALSE |
35 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ABHD12 | 0.08 | 0.09 | blup | 80 | 0.09 | 1.7e-06 | -5.6 | -5.5 | 3.6e-08 | 0.91 | 0.05 | 0.95 | FALSE |
36 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ENTPD6 | 0.07 | 0.07 | lasso | 1 | 0.04 | 9.2e-03 | -5.5 | 5.5 | 4.7e-08 | -0.96 | 0.01 | 0.91 | FALSE |
37 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ABHD12 | 0.03 | 0.02 | lasso | 4 | 0.03 | 5.8e-04 | 5.0 | -5.3 | 9.3e-08 | 0.79 | 0.06 | 0.78 | FALSE |
38 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | NINL | 0.11 | 0.03 | blup | 81 | 0.07 | 2.1e-03 | 5.0 | 5.5 | 3.5e-08 | -0.90 | 0.03 | 0.72 | FALSE |
39 | The Cancer Genome Atlas | Thyroid Carcinoma | ENTPD6 | 0.16 | 0.14 | lasso | 4 | 0.13 | 1.2e-12 | -5.5 | 5.4 | 7.5e-08 | -0.97 | 0.01 | 0.99 | FALSE |
40 | The Cancer Genome Atlas | Thyroid Carcinoma | NINL | 0.08 | 0.14 | lasso | 11 | 0.13 | 2.9e-12 | -5.7 | 5.5 | 4.9e-08 | -0.91 | 0.03 | 0.97 | FALSE |