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chr20:24,230,055-26,182,690

Best TWAS P=7e-14 · Best GWAS P=3.66e-10 conditioned to NaN

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	ABHD12	0.10	0.17	blup	405	0.17	1.7e-20	5.7	7.0	2.5e-12	-0.19	0.12	0.88	FALSE
2	CommonMind	Brain Pre-frontal Cortex	NINL	0.19	0.17	lasso	20	0.23	1.2e-27	5.8	7.0	2.5e-12	-0.16	0.12	0.88	FALSE
3	CommonMind	Brain Pre-frontal Cortex	PYGB	0.10	0.05	lasso	3	0.05	6.9e-07	5.0	-5.5	4.2e-08	0.05	0.13	0.86	TRUE
4	GTEx	Adipose Visceral Omentum	ABHD12	0.06	0.00	lasso	8	0.00	4.6e-01	5.7	6.0	1.5e-09	-0.14	0.11	0.56	FALSE
5	GTEx	Artery Aorta	NINL	0.17	0.18	lasso	6	0.19	1.5e-10	5.7	6.4	1.3e-10	-0.15	0.11	0.89	FALSE
6	GTEx	Artery Tibial	ABHD12	0.12	0.12	enet	25	0.15	7.1e-12	5.4	5.7	1.1e-08	-0.07	0.20	0.80	FALSE
7	GTEx	Brain Caudate basal ganglia	ABHD12	0.09	0.05	enet	13	0.04	2.9e-02	5.8	5.8	7.0e-09	-0.15	0.11	0.67	FALSE
8	GTEx	Brain Cerebellar Hemisphere	PYGB	0.20	0.16	lasso	5	0.12	5.8e-04	5.5	-5.6	1.9e-08	0.14	0.11	0.68	FALSE
9	GTEx	Brain Cerebellar Hemisphere	ACSS1	0.31	0.24	lasso	3	0.16	7.1e-05	-5.2	-5.7	1.5e-08	0.23	0.18	0.10	FALSE
10	GTEx	Brain Cerebellar Hemisphere	ENTPD6	0.22	0.26	lasso	3	0.17	3.8e-05	5.5	-5.6	2.2e-08	0.16	0.17	0.82	FALSE
11	GTEx	Brain Cerebellum	ENTPD6	0.15	0.23	enet	8	0.14	4.6e-05	5.4	-5.7	1.5e-08	0.18	0.21	0.74	FALSE
12	GTEx	Brain Cortex	ABHD12	0.08	0.11	lasso	8	0.09	1.4e-03	5.8	5.3	1.5e-07	-0.06	0.10	0.67	FALSE
13	GTEx	Breast Mammary Tissue	ABHD12	0.08	0.09	lasso	5	0.09	3.3e-05	5.8	6.1	9.5e-10	-0.14	0.14	0.81	FALSE
14	GTEx	Breast Mammary Tissue (Male)	CST7	0.15	0.00	lasso	4	0.03	7.0e-02	-4.5	-5.8	6.1e-09	0.62	0.06	0.09	FALSE
15	GTEx	Breast Mammary Tissue (Male)	ABHD12	0.06	0.01	lasso	3	0.02	1.3e-01	5.3	6.0	1.6e-09	-0.13	0.04	0.22	FALSE
16	GTEx	Cells Transformed fibroblasts	ABHD12	0.24	0.33	lasso	4	0.35	6.3e-27	5.8	5.9	4.2e-09	-0.16	0.10	0.90	FALSE
17	GTEx	Colon Sigmoid	ABHD12	0.17	0.17	lasso	15	0.17	1.0e-06	5.2	5.2	2.1e-07	-0.09	0.17	0.82	FALSE
18	GTEx	Esophagus Gastroesophageal Junction	ABHD12	0.15	0.14	lasso	13	0.14	7.0e-06	5.4	5.5	4.4e-08	-0.16	0.12	0.88	FALSE
19	GTEx	Esophagus Mucosa	ENTPD6	0.09	0.04	enet	20	0.06	4.2e-05	5.7	-5.2	2.3e-07	0.14	0.14	0.85	FALSE
20	GTEx	Esophagus Muscularis	ABHD12	0.10	0.10	enet	42	0.09	4.5e-06	5.7	5.2	1.6e-07	-0.18	0.12	0.87	FALSE
21	GTEx	Heart Atrial Appendage	ABHD12	0.07	0.06	enet	16	0.06	1.0e-03	5.8	5.6	2.1e-08	-0.15	0.11	0.86	FALSE
22	GTEx	Heart Left Ventricle	ABHD12	0.15	0.14	lasso	10	0.12	4.0e-07	5.8	6.3	3.9e-10	-0.18	0.10	0.90	FALSE
23	GTEx	Liver	ABHD12	0.20	0.20	lasso	19	0.15	7.3e-05	5.7	5.6	2.0e-08	-0.15	0.13	0.86	FALSE
24	GTEx	Liver	APMAP	0.20	-0.01	lasso	9	0.00	3.8e-01	5.8	5.7	1.3e-08	-0.26	0.10	0.52	FALSE
25	GTEx	Lung	ABHD12	0.06	0.00	lasso	6	0.00	2.7e-01	5.9	6.5	6.4e-11	-0.12	0.06	0.82	FALSE
26	GTEx	Nerve Tibial	PYGB	0.26	0.15	enet	11	0.14	5.7e-10	5.2	-5.5	3.4e-08	0.09	0.70	0.30	FALSE
27	GTEx	Nerve Tibial	ABHD12	0.24	0.44	lasso	11	0.44	5.1e-34	5.7	-5.5	4.6e-08	0.16	0.14	0.86	FALSE
28	GTEx	Pancreas	ENTPD6	0.11	0.05	enet	23	0.05	5.0e-03	5.9	-6.0	2.2e-09	0.15	0.09	0.85	FALSE
29	GTEx	Pituitary	ABHD12	0.27	0.31	enet	25	0.31	1.8e-08	5.7	6.5	7.4e-11	-0.14	0.13	0.87	FALSE
30	GTEx	Skin Not Sun Exposed Suprapubic	PYGB	0.12	0.13	enet	13	0.14	4.2e-08	5.4	-6.4	2.1e-10	0.28	0.29	0.63	FALSE
31	GTEx	Skin Sun Exposed Lower leg	PYGB	0.11	0.10	lasso	4	0.09	1.2e-07	4.7	-5.2	2.5e-07	0.09	0.54	0.45	FALSE
32	GTEx	Skin Sun Exposed Lower leg	ABHD12	0.07	0.03	lasso	10	0.05	7.3e-05	5.4	6.4	1.8e-10	-0.19	0.18	0.79	FALSE
33	GTEx	Spleen	PYGB	0.15	0.09	lasso	6	0.04	2.6e-02	5.7	5.2	2.4e-07	-0.14	0.12	0.74	FALSE
34	GTEx	Testis	ABHD12	0.21	0.18	enet	25	0.23	1.1e-10	5.8	6.1	1.0e-09	-0.14	0.11	0.89	FALSE
35	GTEx	Thyroid	ABHD12	0.05	0.04	lasso	5	0.03	3.9e-03	5.7	-5.7	1.0e-08	0.16	0.13	0.84	FALSE
36	GTEx	Thyroid	NINL	0.13	0.18	enet	17	0.20	6.2e-15	-3.0	-5.4	7.4e-08	0.19	0.51	0.49	FALSE
37	ROSMAP	Brain Pre-frontal Cortex	PYGB	0.20	0.10	bslmm	414	0.11	3.2e-14	6.0	-6.3	3.6e-10	0.07	0.03	0.97	FALSE
38	ROSMAP	Brain Pre-frontal Cortex	ABHD12	0.26	0.35	enet	35	0.42	7.9e-58	5.4	6.1	1.2e-09	-0.14	0.15	0.85	FALSE
39	ROSMAP	Brain Pre-frontal Cortex	NINL	0.19	0.19	enet	18	0.25	2.1e-32	5.7	5.1	2.8e-07	-0.07	0.11	0.89	FALSE
40	ROSMAP	Brain Pre-frontal Cortex	ENTPD6	0.32	0.10	bslmm	432	0.12	1.8e-15	5.9	7.5	7.0e-14	-0.70	0.03	0.97	TRUE
41	YFS	Blood	ABHD12	0.15	0.35	bslmm	390	0.34	2.2e-118	5.8	6.1	1.3e-09	-0.16	0.09	0.91	TRUE
42	YFS	Blood	NINL	0.04	0.03	lasso	8	0.03	2.8e-10	6.0	6.0	2.3e-09	-0.07	0.03	0.97	TRUE
43	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	ABHD12	0.04	0.00	blup	77	0.02	6.6e-03	5.6	5.2	1.6e-07	-0.17	0.04	0.53	FALSE
44	The Cancer Genome Atlas	Breast Invasive Carcinoma	PYGB	0.08	0.02	enet	7	0.03	1.7e-07	5.6	-5.7	1.1e-08	0.06	0.13	0.86	FALSE
45	The Cancer Genome Atlas	Cervical Squamous Cell Carcinoma	PYGB	0.08	0.04	blup	74	0.06	1.0e-03	5.7	-6.1	8.8e-10	0.14	0.06	0.76	TRUE
46	The Cancer Genome Atlas	Colon Adenocarcinoma	NINL	0.20	0.06	lasso	4	0.08	2.7e-05	5.4	6.0	2.3e-09	-0.04	0.01	0.97	FALSE
47	The Cancer Genome Atlas	Glioblastoma Multiforme	ABHD12	0.14	0.10	lasso	5	0.13	1.1e-04	5.2	5.5	4.2e-08	-0.15	0.06	0.89	FALSE
48	The Cancer Genome Atlas	Glioblastoma Multiforme	VSX1	0.12	0.08	blup	46	0.05	1.2e-02	-4.6	5.4	7.0e-08	-0.19	0.01	0.68	FALSE
49	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	ABHD12	0.04	0.03	blup	77	0.04	4.0e-05	5.8	5.5	3.1e-08	-0.16	0.05	0.95	FALSE
50	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	ABHD12	0.03	0.01	blup	77	0.01	8.7e-03	4.7	6.0	2.6e-09	-0.14	0.06	0.76	FALSE
51	The Cancer Genome Atlas	Kidney Renal Papillary Cell Carcinoma	ENTPD6	0.29	0.17	lasso	4	0.18	1.0e-10	4.7	-5.4	8.7e-08	0.10	0.25	0.75	FALSE
52	The Cancer Genome Atlas	Brain Lower Grade Glioma	ABHD12	0.04	0.06	blup	77	0.06	2.2e-07	5.8	5.9	3.1e-09	-0.15	0.06	0.94	FALSE
53	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	ABHD12	0.07	0.05	blup	77	0.05	2.4e-03	5.7	5.5	4.0e-08	-0.15	0.05	0.84	FALSE
54	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	ABHD12	0.08	0.09	blup	80	0.09	1.7e-06	5.6	5.5	3.9e-08	-0.12	0.06	0.94	FALSE
55	The Cancer Genome Atlas	Pheochromocytoma and Paraganglioma	ENTPD6	0.07	0.07	lasso	1	0.04	9.2e-03	5.5	-5.5	4.4e-08	0.15	0.06	0.32	FALSE
56	The Cancer Genome Atlas	Prostate Adenocarcinoma	ABHD12	0.03	0.02	lasso	4	0.03	5.8e-04	-5.1	5.3	1.0e-07	-0.17	0.07	0.75	FALSE
57	The Cancer Genome Atlas	Prostate Adenocarcinoma	PYGB	0.21	0.13	enet	5	0.17	2.0e-17	4.7	-5.7	1.2e-08	0.09	0.84	0.16	FALSE
58	The Cancer Genome Atlas	Testicular Germ Cell Tumors	NINL	0.11	0.03	blup	81	0.07	2.1e-03	-5.1	-5.2	2.1e-07	0.16	0.04	0.62	FALSE
59	The Cancer Genome Atlas	Thyroid Carcinoma	ENTPD6	0.16	0.14	lasso	4	0.13	1.2e-12	5.5	-5.5	3.7e-08	0.16	0.16	0.84	FALSE
60	The Cancer Genome Atlas	Thyroid Carcinoma	NINL	0.08	0.14	lasso	11	0.13	2.9e-12	5.8	-5.6	1.7e-08	0.16	0.03	0.97	FALSE
61	The Cancer Genome Atlas	Thyroid Carcinoma	PYGB	0.10	0.08	lasso	7	0.07	1.4e-07	5.1	-5.9	3.4e-09	0.10	0.22	0.78	FALSE