Best TWAS P=7.36e-16 · Best GWAS P=1.1e-15 conditioned to 4.4e-17
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | MARCH2 | 0.30 | 0.30 | lasso | 6 | 0.31 | 5.9e-26 | 5.4 | 5.4 | 5.7e-08 | 0.01 | 0.13 | 0.86 | FALSE |
2 | GTEx | Adipose Visceral Omentum | MARCH2 | 0.27 | 0.17 | lasso | 4 | 0.15 | 4.0e-08 | 5.3 | 5.4 | 8.1e-08 | 0.00 | 0.16 | 0.84 | FALSE |
3 | GTEx | Artery Aorta | MARCH2 | 0.52 | 0.46 | lasso | 5 | 0.50 | 2.0e-31 | 5.4 | 5.3 | 1.5e-07 | 0.00 | 0.14 | 0.86 | FALSE |
4 | GTEx | Artery Tibial | MARCH2 | 0.36 | 0.37 | lasso | 5 | 0.44 | 5.0e-37 | 4.4 | 5.2 | 2.4e-07 | 0.00 | 0.18 | 0.81 | FALSE |
5 | GTEx | Brain Cerebellum | MARCH2 | 0.35 | 0.22 | lasso | 5 | 0.19 | 2.9e-06 | 5.4 | 5.4 | 7.0e-08 | 0.01 | 0.12 | 0.83 | FALSE |
6 | GTEx | Brain Frontal Cortex BA9 | MARCH2 | 0.48 | 0.13 | lasso | 10 | 0.14 | 1.2e-04 | 5.4 | 5.3 | 9.0e-08 | -0.01 | 0.10 | 0.57 | FALSE |
7 | GTEx | Brain Nucleus accumbens basal ganglia | MARCH2 | 0.30 | 0.21 | lasso | 5 | 0.28 | 3.9e-08 | 5.1 | 5.4 | 8.5e-08 | 0.01 | 0.18 | 0.75 | FALSE |
8 | GTEx | Breast Mammary Tissue | MARCH2 | 0.24 | 0.13 | lasso | 7 | 0.11 | 4.6e-06 | 5.4 | 5.5 | 5.0e-08 | -0.01 | 0.11 | 0.88 | FALSE |
9 | GTEx | Breast Mammary Tissue (Female) | MARCH2 | 0.26 | 0.14 | lasso | 6 | 0.11 | 3.3e-04 | 5.4 | 5.2 | 1.7e-07 | -0.01 | 0.12 | 0.65 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | MARCH2 | 0.35 | 0.27 | enet | 14 | 0.35 | 2.6e-27 | 5.4 | 5.2 | 2.5e-07 | -0.01 | 0.17 | 0.83 | FALSE |
11 | GTEx | Esophagus Gastroesophageal Junction | MARCH2 | 0.40 | 0.24 | enet | 52 | 0.25 | 1.2e-09 | 5.4 | 5.5 | 4.4e-08 | 0.05 | 0.11 | 0.89 | FALSE |
12 | GTEx | Esophagus Muscularis | MARCH2 | 0.34 | 0.30 | enet | 22 | 0.32 | 6.9e-20 | 5.4 | 5.7 | 1.2e-08 | 0.00 | 0.10 | 0.90 | FALSE |
13 | GTEx | Esophagus Muscularis | ZNF414 | 0.18 | 0.09 | lasso | 3 | 0.07 | 3.2e-05 | -4.9 | -5.1 | 2.7e-07 | -0.06 | 0.51 | 0.41 | FALSE |
14 | GTEx | Heart Left Ventricle | MARCH2 | 0.36 | 0.26 | enet | 21 | 0.28 | 3.3e-15 | 5.3 | 5.7 | 1.2e-08 | -0.02 | 0.12 | 0.88 | FALSE |
15 | GTEx | Lung | MARCH2 | 0.36 | 0.25 | lasso | 8 | 0.29 | 2.8e-22 | 5.4 | 5.4 | 5.9e-08 | -0.01 | 0.11 | 0.89 | FALSE |
16 | GTEx | Lung | EVI5L | 0.17 | 0.10 | lasso | 7 | 0.12 | 7.9e-10 | 4.9 | 5.9 | 4.6e-09 | 0.02 | 0.01 | 0.98 | TRUE |
17 | GTEx | Pancreas | MARCH2 | 0.19 | 0.09 | lasso | 3 | 0.08 | 2.8e-04 | 5.3 | 5.2 | 2.0e-07 | -0.01 | 0.12 | 0.60 | FALSE |
18 | GTEx | Skin Not Sun Exposed Suprapubic | MARCH2 | 0.42 | 0.33 | enet | 27 | 0.35 | 5.6e-20 | 5.3 | 6.1 | 9.1e-10 | -0.01 | 0.12 | 0.88 | FALSE |
19 | GTEx | Skin Sun Exposed Lower leg | MARCH2 | 0.33 | 0.33 | lasso | 6 | 0.34 | 4.1e-29 | 5.4 | 5.3 | 1.4e-07 | 0.00 | 0.12 | 0.88 | FALSE |
20 | GTEx | Stomach | MARCH2 | 0.33 | 0.05 | enet | 27 | 0.11 | 6.9e-06 | 4.4 | 5.4 | 8.0e-08 | 0.05 | 0.19 | 0.80 | FALSE |
21 | GTEx | Testis | MARCH2 | 0.26 | 0.22 | enet | 12 | 0.22 | 6.8e-10 | 5.4 | 5.3 | 1.3e-07 | -0.01 | 0.11 | 0.89 | FALSE |
22 | GTEx | Vagina | MARCH2 | 0.60 | 0.05 | enet | 24 | 0.14 | 4.3e-04 | 5.1 | 5.3 | 1.4e-07 | 0.08 | 0.05 | 0.12 | FALSE |
23 | NTR | Blood | MARCH2 | 0.05 | 0.06 | lasso | 4 | 0.06 | 1.0e-18 | 5.1 | 5.3 | 1.2e-07 | 0.01 | 0.22 | 0.78 | FALSE |
24 | ROSMAP | Brain Pre-frontal Cortex | PRAM1 | 0.04 | 0.00 | enet | 15 | 0.01 | 4.5e-02 | 3.8 | -5.3 | 1.4e-07 | 0.01 | 0.13 | 0.22 | FALSE |
25 | ROSMAP | Brain Pre-frontal Cortex | INSR | 0.15 | 0.09 | bslmm | 487 | 0.08 | 6.2e-11 | -6.8 | 5.7 | 1.4e-08 | 0.01 | 0.77 | 0.23 | TRUE |
26 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MARCH2 | 0.07 | 0.07 | blup | 42 | 0.08 | 1.4e-07 | 5.0 | 5.1 | 2.9e-07 | 0.00 | 0.01 | 0.98 | FALSE |
27 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MARCH2 | 0.06 | 0.06 | lasso | 3 | 0.06 | 7.5e-12 | 5.4 | 5.5 | 4.4e-08 | -0.01 | 0.00 | 1.00 | FALSE |
28 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | MARCH2 | 0.08 | 0.06 | lasso | 5 | 0.06 | 5.5e-04 | 5.4 | 5.4 | 6.1e-08 | 0.01 | 0.01 | 0.98 | FALSE |
29 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MARCH2 | 0.10 | 0.10 | enet | 9 | 0.12 | 1.9e-13 | 5.0 | 5.2 | 1.6e-07 | 0.00 | 0.01 | 0.99 | FALSE |
30 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MYO1F | 0.05 | 0.01 | blup | 42 | 0.03 | 2.2e-04 | -5.0 | -8.1 | 7.4e-16 | -0.02 | 0.03 | 0.39 | TRUE |
31 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | MARCH2 | 0.08 | 0.10 | enet | 5 | 0.10 | 2.6e-11 | 5.4 | 5.4 | 8.2e-08 | 0.00 | 0.00 | 1.00 | FALSE |
32 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PRAM1 | 0.03 | 0.01 | blup | 44 | 0.01 | 7.3e-02 | 5.1 | -5.8 | 8.8e-09 | -0.01 | 0.01 | 0.76 | FALSE |
33 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MARCH2 | 0.12 | 0.15 | lasso | 4 | 0.15 | 6.9e-16 | 5.4 | 5.4 | 6.1e-08 | 0.01 | 0.00 | 0.99 | FALSE |
34 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PRAM1 | 0.04 | 0.03 | enet | 10 | 0.04 | 1.3e-04 | 5.4 | -5.2 | 2.0e-07 | 0.00 | 0.00 | 0.85 | FALSE |
35 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ZNF414 | 0.04 | 0.01 | blup | 39 | 0.02 | 1.9e-03 | -5.0 | -5.2 | 2.2e-07 | -0.04 | 0.03 | 0.90 | FALSE |
36 | The Cancer Genome Atlas | Stomach Adenocarcinoma | MARCH2 | 0.09 | 0.10 | blup | 42 | 0.10 | 6.1e-08 | 5.4 | 5.2 | 1.7e-07 | 0.00 | 0.00 | 1.00 | FALSE |
37 | The Cancer Genome Atlas | Stomach Adenocarcinoma | PRAM1 | 0.05 | 0.02 | blup | 44 | 0.01 | 3.4e-02 | -4.8 | -5.8 | 7.3e-09 | -0.05 | 0.02 | 0.40 | FALSE |