Best TWAS P=1.32e-14 · Best GWAS P=4.92e-15 conditioned to 0.000213
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | BMP8A | 0.05 | 0.03 | lasso | 3 | 0.02 | 8.8e-04 | 6.1 | 6.4 | 2.1e-10 | 0.71 | 0.06 | 0.89 | FALSE |
2 | GTEx | Adipose Subcutaneous | PABPC4 | 0.15 | 0.04 | lasso | 8 | 0.04 | 3.3e-04 | 3.2 | -5.6 | 2.0e-08 | -0.77 | 0.05 | 0.94 | FALSE |
3 | GTEx | Adipose Subcutaneous | SF3A3 | 0.17 | 0.12 | lasso | 4 | 0.11 | 2.6e-09 | 5.2 | 5.2 | 1.7e-07 | -0.07 | 0.08 | 0.92 | FALSE |
4 | GTEx | Adipose Visceral Omentum | FHL3 | 0.10 | 0.02 | enet | 9 | 0.00 | 1.9e-01 | 5.5 | 5.8 | 8.7e-09 | -0.07 | 0.05 | 0.80 | FALSE |
5 | GTEx | Adipose Visceral Omentum | SF3A3 | 0.20 | 0.18 | lasso | 2 | 0.18 | 1.5e-09 | 5.6 | 5.4 | 5.7e-08 | -0.07 | 0.05 | 0.95 | FALSE |
6 | GTEx | Adrenal Gland | PABPC4 | 0.20 | 0.09 | lasso | 8 | 0.06 | 3.0e-03 | 5.9 | -7.2 | 6.7e-13 | -0.77 | 0.05 | 0.82 | FALSE |
7 | GTEx | Adrenal Gland | RP11-69E11.4 | 0.11 | 0.05 | lasso | 3 | 0.00 | 2.4e-01 | 5.0 | 6.0 | 1.6e-09 | 0.52 | 0.07 | 0.44 | FALSE |
8 | GTEx | Adrenal Gland | FHL3 | 0.24 | 0.15 | enet | 17 | 0.34 | 7.4e-13 | 5.2 | 6.6 | 4.9e-11 | -0.02 | 0.01 | 0.99 | TRUE |
9 | GTEx | Artery Aorta | FHL3 | 0.35 | 0.22 | lasso | 4 | 0.27 | 3.9e-15 | 5.2 | 6.0 | 1.5e-09 | -0.05 | 0.01 | 0.99 | FALSE |
10 | GTEx | Artery Aorta | SF3A3 | 0.12 | 0.19 | lasso | 2 | 0.18 | 6.6e-10 | 5.2 | 5.2 | 1.6e-07 | -0.08 | 0.09 | 0.91 | FALSE |
11 | GTEx | Artery Aorta | INPP5B | 0.21 | 0.13 | lasso | 3 | 0.21 | 5.5e-12 | -3.9 | 5.3 | 1.2e-07 | -0.03 | 0.12 | 0.88 | FALSE |
12 | GTEx | Artery Coronary | FHL3 | 0.31 | 0.22 | lasso | 5 | 0.18 | 1.3e-06 | 5.2 | 5.4 | 5.5e-08 | -0.07 | 0.06 | 0.92 | FALSE |
13 | GTEx | Artery Coronary | INPP5B | 0.27 | 0.28 | enet | 5 | 0.18 | 1.4e-06 | 5.0 | 5.3 | 1.2e-07 | -0.07 | 0.05 | 0.95 | FALSE |
14 | GTEx | Artery Coronary | RP11-109P14.10 | 0.26 | 0.10 | enet | 10 | 0.00 | 3.7e-01 | 5.2 | 5.7 | 1.6e-08 | -0.07 | 0.02 | 0.96 | FALSE |
15 | GTEx | Artery Tibial | PABPC4 | 0.10 | 0.10 | lasso | 4 | 0.10 | 3.4e-08 | 5.9 | -5.9 | 4.3e-09 | -0.72 | 0.49 | 0.51 | FALSE |
16 | GTEx | Artery Tibial | FHL3 | 0.13 | 0.11 | lasso | 2 | 0.13 | 1.1e-10 | 5.6 | 5.9 | 4.6e-09 | -0.06 | 0.03 | 0.97 | FALSE |
17 | GTEx | Artery Tibial | SF3A3 | 0.16 | 0.11 | enet | 8 | 0.12 | 1.2e-09 | 5.2 | 5.5 | 4.9e-08 | -0.06 | 0.06 | 0.94 | FALSE |
18 | GTEx | Artery Tibial | UTP11L | 0.09 | 0.14 | lasso | 3 | 0.12 | 1.1e-09 | 5.6 | 5.8 | 6.9e-09 | -0.06 | 0.03 | 0.97 | FALSE |
19 | GTEx | Brain Cerebellar Hemisphere | RP11-69E11.4 | 0.22 | 0.08 | enet | 16 | 0.08 | 4.5e-03 | 5.1 | 5.2 | 1.5e-07 | 0.63 | 0.20 | 0.50 | FALSE |
20 | GTEx | Breast Mammary Tissue | PABPC4 | 0.13 | 0.02 | enet | 14 | 0.04 | 3.4e-03 | 6.1 | -5.8 | 6.8e-09 | -0.70 | 0.07 | 0.82 | FALSE |
21 | GTEx | Breast Mammary Tissue | SF3A3 | 0.14 | 0.18 | lasso | 2 | 0.16 | 8.5e-09 | 5.2 | 5.3 | 9.0e-08 | -0.08 | 0.08 | 0.91 | FALSE |
22 | GTEx | Breast Mammary Tissue (Female) | PABPC4 | 0.10 | 0.00 | enet | 9 | 0.01 | 1.5e-01 | 7.4 | -7.2 | 6.9e-13 | -0.83 | 0.03 | 0.47 | FALSE |
23 | GTEx | Breast Mammary Tissue (Female) | SF3A3 | 0.08 | 0.16 | lasso | 1 | 0.10 | 6.2e-04 | 5.2 | 5.2 | 2.0e-07 | -0.08 | 0.05 | 0.61 | FALSE |
24 | GTEx | Cells EBV-transformed lymphocytes | SF3A3 | 0.23 | 0.11 | enet | 18 | 0.09 | 5.8e-04 | 5.6 | 5.6 | 1.7e-08 | -0.05 | 0.02 | 0.93 | FALSE |
25 | GTEx | Cells Transformed fibroblasts | PABPC4 | 0.07 | 0.09 | lasso | 1 | 0.06 | 2.7e-05 | 5.9 | -5.9 | 4.7e-09 | -0.68 | 0.16 | 0.80 | FALSE |
26 | GTEx | Cells Transformed fibroblasts | FHL3 | 0.24 | 0.17 | lasso | 4 | 0.15 | 1.4e-11 | 5.6 | 5.7 | 1.5e-08 | -0.06 | 0.03 | 0.97 | FALSE |
27 | GTEx | Colon Transverse | RP11-69E11.4 | 0.23 | 0.12 | lasso | 4 | 0.15 | 1.8e-07 | 6.1 | 5.4 | 7.8e-08 | 0.67 | 0.28 | 0.71 | FALSE |
28 | GTEx | Esophagus Gastroesophageal Junction | SF3A3 | 0.23 | 0.11 | lasso | 6 | 0.08 | 7.7e-04 | 5.6 | 5.3 | 9.7e-08 | -0.08 | 0.04 | 0.92 | FALSE |
29 | GTEx | Esophagus Mucosa | PABPC4 | 0.06 | 0.06 | lasso | 3 | 0.08 | 7.3e-06 | 6.1 | -6.2 | 5.2e-10 | -0.73 | 0.31 | 0.64 | FALSE |
30 | GTEx | Esophagus Mucosa | RP11-69E11.4 | 0.18 | 0.06 | lasso | 9 | 0.07 | 2.2e-05 | 5.1 | 6.0 | 2.1e-09 | 0.64 | 0.77 | 0.21 | FALSE |
31 | GTEx | Esophagus Mucosa | FHL3 | 0.14 | 0.14 | lasso | 5 | 0.12 | 3.4e-08 | 5.6 | 5.6 | 1.7e-08 | -0.07 | 0.04 | 0.96 | FALSE |
32 | GTEx | Esophagus Mucosa | SF3A3 | 0.08 | 0.06 | lasso | 4 | 0.05 | 1.5e-04 | 5.6 | 5.5 | 3.5e-08 | -0.07 | 0.05 | 0.94 | FALSE |
33 | GTEx | Esophagus Mucosa | BMP8A | 0.08 | 0.02 | lasso | 2 | 0.01 | 1.4e-01 | -2.9 | 6.2 | 4.2e-10 | 0.69 | 0.08 | 0.88 | FALSE |
34 | GTEx | Esophagus Mucosa | PPIEL | 0.11 | 0.02 | lasso | 3 | 0.02 | 9.4e-03 | 6.5 | 6.2 | 8.0e-10 | 0.76 | 0.13 | 0.59 | FALSE |
35 | GTEx | Esophagus Muscularis | SF3A3 | 0.14 | 0.03 | enet | 13 | 0.06 | 2.9e-04 | 5.6 | 5.6 | 2.3e-08 | -0.10 | 0.04 | 0.90 | FALSE |
36 | GTEx | Esophagus Muscularis | RP11-109P14.10 | 0.17 | 0.11 | lasso | 6 | 0.13 | 3.6e-08 | -4.3 | 5.2 | 1.8e-07 | -0.03 | 0.25 | 0.75 | FALSE |
37 | GTEx | Heart Atrial Appendage | SF3A3 | 0.15 | 0.12 | lasso | 4 | 0.08 | 1.4e-04 | 5.2 | 5.4 | 6.6e-08 | -0.07 | 0.06 | 0.85 | FALSE |
38 | GTEx | Lung | PABPC4 | 0.05 | 0.03 | lasso | 3 | 0.02 | 1.3e-02 | 5.9 | -5.4 | 7.4e-08 | -0.64 | 0.12 | 0.70 | FALSE |
39 | GTEx | Lung | RP11-69E11.4 | 0.26 | 0.09 | lasso | 9 | 0.20 | 3.8e-15 | -2.9 | 5.5 | 4.1e-08 | 0.49 | 0.93 | 0.07 | FALSE |
40 | GTEx | Lung | FHL3 | 0.14 | 0.07 | enet | 24 | 0.13 | 6.0e-10 | 5.1 | 5.6 | 2.1e-08 | -0.01 | 0.02 | 0.98 | FALSE |
41 | GTEx | Lung | SF3A3 | 0.21 | 0.20 | lasso | 2 | 0.21 | 1.1e-15 | 5.6 | 5.4 | 5.7e-08 | -0.07 | 0.05 | 0.95 | FALSE |
42 | GTEx | Nerve Tibial | PABPC4 | 0.17 | 0.08 | enet | 12 | 0.05 | 2.7e-04 | 5.9 | -5.9 | 2.9e-09 | -0.73 | 0.07 | 0.92 | FALSE |
43 | GTEx | Nerve Tibial | RP11-69E11.4 | 0.18 | 0.08 | lasso | 5 | 0.18 | 1.3e-12 | 4.8 | 5.7 | 1.4e-08 | 0.66 | 0.53 | 0.47 | FALSE |
44 | GTEx | Nerve Tibial | FHL3 | 0.20 | 0.12 | lasso | 7 | 0.14 | 1.9e-10 | 5.0 | 5.6 | 2.3e-08 | -0.05 | 0.02 | 0.98 | FALSE |
45 | GTEx | Nerve Tibial | SF3A3 | 0.35 | 0.36 | lasso | 4 | 0.35 | 7.6e-26 | 5.2 | 5.2 | 1.5e-07 | -0.07 | 0.16 | 0.84 | FALSE |
46 | GTEx | Nerve Tibial | RP11-69E11.8 | 0.05 | 0.00 | lasso | 3 | 0.01 | 6.9e-02 | 5.9 | -6.3 | 2.9e-10 | -0.75 | 0.03 | 0.86 | FALSE |
47 | GTEx | Ovary | RP11-69E11.4 | 0.25 | 0.05 | enet | 11 | 0.03 | 6.7e-02 | 5.3 | 6.4 | 1.2e-10 | 0.68 | 0.05 | 0.42 | FALSE |
48 | GTEx | Pancreas | FHL3 | 0.17 | 0.05 | lasso | 3 | 0.10 | 6.6e-05 | -6.0 | 6.3 | 3.4e-10 | 0.00 | 0.00 | 1.00 | FALSE |
49 | GTEx | Skin Not Sun Exposed Suprapubic | PABPC4 | 0.12 | 0.10 | lasso | 3 | 0.05 | 1.0e-03 | 6.1 | -6.2 | 4.2e-10 | -0.71 | 0.27 | 0.44 | FALSE |
50 | GTEx | Skin Not Sun Exposed Suprapubic | FHL3 | 0.11 | 0.11 | lasso | 4 | 0.07 | 1.0e-04 | 5.5 | 5.6 | 2.4e-08 | -0.05 | 0.02 | 0.97 | FALSE |
51 | GTEx | Skin Not Sun Exposed Suprapubic | SF3A3 | 0.24 | 0.14 | lasso | 4 | 0.15 | 1.1e-08 | 5.2 | 5.3 | 1.1e-07 | -0.07 | 0.09 | 0.91 | FALSE |
52 | GTEx | Skin Sun Exposed Lower leg | PABPC4 | 0.11 | 0.09 | lasso | 7 | 0.08 | 2.7e-07 | 6.1 | -6.0 | 1.4e-09 | -0.71 | 0.32 | 0.67 | FALSE |
53 | GTEx | Skin Sun Exposed Lower leg | MACF1 | 0.08 | 0.08 | lasso | 2 | 0.06 | 5.3e-06 | 5.1 | -5.2 | 1.7e-07 | -0.70 | 0.48 | 0.51 | FALSE |
54 | GTEx | Skin Sun Exposed Lower leg | RP11-69E11.4 | 0.13 | 0.12 | lasso | 6 | 0.15 | 1.3e-12 | 6.7 | 6.7 | 3.0e-11 | 0.72 | 0.88 | 0.12 | FALSE |
55 | GTEx | Skin Sun Exposed Lower leg | FHL3 | 0.15 | 0.09 | lasso | 5 | 0.10 | 1.2e-08 | -6.0 | 5.9 | 3.6e-09 | -0.01 | 0.00 | 1.00 | FALSE |
56 | GTEx | Spleen | RP11-69E11.4 | 0.25 | 0.12 | lasso | 4 | 0.15 | 9.3e-05 | 5.1 | 6.4 | 1.3e-10 | 0.70 | 0.19 | 0.59 | FALSE |
57 | GTEx | Spleen | BMP8A | 0.16 | 0.08 | lasso | 3 | 0.05 | 1.6e-02 | 6.7 | 6.1 | 1.3e-09 | 0.75 | 0.07 | 0.32 | FALSE |
58 | GTEx | Stomach | RP11-69E11.4 | 0.31 | 0.20 | lasso | 4 | 0.20 | 4.0e-10 | 5.1 | 5.6 | 2.2e-08 | 0.54 | 0.85 | 0.15 | FALSE |
59 | GTEx | Thyroid | PABPC4 | 0.08 | 0.03 | lasso | 6 | 0.05 | 1.3e-04 | 7.2 | -5.5 | 4.8e-08 | -0.78 | 0.08 | 0.89 | FALSE |
60 | GTEx | Thyroid | RP11-69E11.4 | 0.17 | 0.04 | lasso | 9 | 0.06 | 4.4e-05 | 5.1 | 5.2 | 1.6e-07 | 0.55 | 0.26 | 0.51 | FALSE |
61 | GTEx | Thyroid | SF3A3 | 0.13 | 0.16 | lasso | 2 | 0.16 | 1.7e-12 | 5.2 | 5.4 | 6.2e-08 | -0.07 | 0.05 | 0.95 | FALSE |
62 | METSIM | Adipose | FHL3 | 0.15 | 0.12 | lasso | 5 | 0.14 | 6.3e-20 | -6.0 | 5.7 | 1.5e-08 | -0.01 | 0.00 | 1.00 | FALSE |
63 | METSIM | Adipose | PABPC4 | 0.05 | 0.02 | lasso | 6 | 0.03 | 6.0e-05 | 6.1 | -5.4 | 5.3e-08 | -0.71 | 0.06 | 0.93 | FALSE |
64 | METSIM | Adipose | SF3A3 | 0.08 | 0.11 | lasso | 3 | 0.11 | 7.4e-16 | 5.6 | 5.6 | 2.7e-08 | -0.07 | 0.05 | 0.95 | FALSE |
65 | NTR | Blood | KIAA0754 | 0.03 | 0.00 | bslmm | 366 | 0.01 | 1.6e-03 | -1.1 | 6.4 | 1.4e-10 | 0.62 | 0.08 | 0.79 | FALSE |
66 | NTR | Blood | PABPC4 | 0.01 | 0.00 | blup | 383 | 0.00 | 2.8e-02 | 5.9 | -7.7 | 1.3e-14 | -0.68 | 0.04 | 0.50 | TRUE |
67 | NTR | Blood | SF3A3 | 0.10 | 0.12 | lasso | 6 | 0.13 | 7.2e-39 | -6.0 | -5.7 | 1.4e-08 | 0.01 | 0.00 | 1.00 | FALSE |
68 | ROSMAP | Brain Pre-frontal Cortex | FHL3 | 0.07 | 0.06 | enet | 8 | 0.06 | 4.9e-08 | 5.0 | 5.3 | 1.4e-07 | -0.08 | 0.07 | 0.93 | FALSE |
69 | YFS | Blood | FHL3 | 0.69 | 0.49 | enet | 33 | 0.57 | 8.2e-237 | 3.4 | 5.4 | 5.8e-08 | 0.06 | 0.99 | 0.00 | FALSE |
70 | YFS | Blood | SF3A3 | 0.50 | 0.29 | enet | 44 | 0.44 | 3.2e-162 | 5.6 | 5.7 | 1.0e-08 | 0.00 | 0.03 | 0.97 | FALSE |
71 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | FHL3 | 0.08 | 0.02 | enet | 7 | 0.03 | 1.1e-03 | 5.2 | 5.5 | 3.9e-08 | 0.02 | 0.00 | 0.95 | FALSE |
72 | The Cancer Genome Atlas | Breast Invasive Carcinoma | BMP8A | 0.05 | 0.01 | lasso | 6 | 0.02 | 5.5e-05 | 6.1 | 5.8 | 6.6e-09 | 0.55 | 0.47 | 0.20 | FALSE |
73 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FHL3 | 0.06 | 0.01 | enet | 10 | 0.01 | 4.2e-04 | -6.0 | 5.6 | 2.1e-08 | 0.00 | 0.00 | 0.99 | FALSE |
74 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PABPC4 | 0.03 | 0.03 | lasso | 2 | 0.04 | 1.3e-08 | 5.9 | -5.9 | 3.9e-09 | -0.62 | 0.00 | 0.99 | FALSE |
75 | The Cancer Genome Atlas | Colon Adenocarcinoma | FHL3 | 0.10 | 0.05 | lasso | 2 | 0.06 | 2.9e-04 | 5.6 | 6.2 | 7.1e-10 | -0.04 | 0.00 | 0.98 | FALSE |
76 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | BMP8A | 0.04 | 0.03 | blup | 48 | 0.04 | 3.5e-05 | 5.1 | 6.7 | 3.0e-11 | 0.68 | 0.02 | 0.97 | FALSE |
77 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | PABPC4 | 0.03 | 0.01 | enet | 4 | 0.02 | 4.3e-03 | 5.9 | -5.6 | 2.2e-08 | -0.68 | 0.00 | 0.99 | FALSE |
78 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PABPC4 | 0.04 | 0.05 | blup | 31 | 0.04 | 1.2e-05 | 4.9 | -5.6 | 1.9e-08 | -0.57 | 0.03 | 0.96 | FALSE |
79 | The Cancer Genome Atlas | Brain Lower Grade Glioma | BMP8A | 0.05 | 0.01 | blup | 48 | 0.04 | 6.8e-05 | 7.0 | 6.4 | 1.3e-10 | 0.68 | 0.00 | 0.98 | FALSE |
80 | The Cancer Genome Atlas | Brain Lower Grade Glioma | INPP5B | 0.05 | 0.03 | blup | 68 | 0.05 | 6.7e-06 | 5.1 | 5.9 | 4.3e-09 | -0.05 | 0.03 | 0.96 | FALSE |
81 | The Cancer Genome Atlas | Lung Adenocarcinoma | FHL3 | 0.03 | 0.02 | blup | 45 | 0.02 | 2.4e-03 | 5.0 | 5.2 | 2.4e-07 | -0.02 | 0.01 | 0.75 | FALSE |
82 | The Cancer Genome Atlas | Lung Adenocarcinoma | PABPC4 | 0.04 | 0.03 | enet | 8 | 0.04 | 4.5e-05 | 6.1 | -5.8 | 7.1e-09 | -0.62 | 0.00 | 1.00 | FALSE |
83 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | FHL3 | 0.08 | 0.08 | lasso | 2 | 0.08 | 1.4e-09 | -6.0 | 6.0 | 2.3e-09 | 0.01 | 0.00 | 1.00 | FALSE |
84 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | FHL3 | 0.13 | 0.03 | enet | 6 | 0.05 | 4.9e-04 | -6.0 | 6.5 | 8.2e-11 | -0.07 | 0.00 | 0.94 | FALSE |
85 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PPIEL | 0.04 | 0.02 | lasso | 4 | 0.02 | 1.7e-03 | 5.1 | 5.4 | 5.4e-08 | 0.55 | 0.04 | 0.44 | FALSE |
86 | The Cancer Genome Atlas | Stomach Adenocarcinoma | FHL3 | 0.10 | 0.05 | lasso | 2 | 0.03 | 2.2e-03 | -6.0 | 5.8 | 5.3e-09 | -0.01 | 0.00 | 0.96 | FALSE |
87 | The Cancer Genome Atlas | Thyroid Carcinoma | FHL3 | 0.12 | 0.03 | enet | 8 | 0.03 | 6.4e-04 | 5.0 | 5.5 | 4.4e-08 | -0.06 | 0.01 | 0.99 | FALSE |
88 | The Cancer Genome Atlas | Thyroid Carcinoma | PABPC4 | 0.09 | 0.07 | enet | 5 | 0.08 | 4.1e-08 | 5.9 | -6.2 | 5.9e-10 | -0.62 | 0.00 | 1.00 | FALSE |