TWAS
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Models
Genes
Traits
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Traits
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Basal metabolic rate
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chr19:7,211,841-9,200,017
Best TWAS P=4.86e-14 · Best GWAS P=6.83e-10 conditioned to 0.000142
7.5M
8M
8.5M
9M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
MYO1F
0.05
0.01
blup
42
0.03
2.2e-04
-4.9
-7.5
4.9e-14
0.32
0.03
0.37
TRUE
1
GTEx
Lung
EVI5L
0.17
0.10
lasso
7
0.12
7.9e-10
4.3
5.4
8.3e-08
-0.03
0.02
0.92
TRUE
2
GTEx
Skin Not Sun Exposed Suprapubic
MARCH2
0.42
0.33
enet
27
0.35
5.6e-20
4.6
5.3
1.0e-07
-0.17
0.82
0.18
FALSE
4
The Cancer Genome Atlas
Stomach Adenocarcinoma
PRAM1
0.05
0.02
blup
44
0.01
3.4e-02
-4.4
-5.3
1.1e-07
0.01
0.01
0.49
FALSE