Best TWAS P=2.16e-16 · Best GWAS P=7.49e-17 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | NARS2 | 0.44 | 0.57 | bslmm | 502 | 0.56 | 2.1e-81 | 6.786 | -6.8 | 1.5e-11 | -0.65 | 1.00 | 0.00 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | USP35 | 0.06 | 0.05 | blup | 363 | 0.04 | 1.6e-05 | 6.643 | 7.1 | 1.5e-12 | 0.77 | 0.03 | 0.96 | FALSE |
3 | GTEx | Adipose Subcutaneous | NARS2 | 0.19 | 0.12 | lasso | 5 | 0.09 | 3.6e-08 | 6.786 | -7.0 | 2.3e-12 | -0.66 | 0.98 | 0.02 | FALSE |
4 | GTEx | Adipose Visceral Omentum | ALG8 | 0.11 | 0.01 | enet | 8 | 0.02 | 3.7e-02 | 8.200 | 6.5 | 5.9e-11 | 0.90 | 0.01 | 0.95 | FALSE |
5 | GTEx | Artery Aorta | GAB2 | 0.10 | 0.02 | lasso | 4 | 0.02 | 1.7e-02 | 7.801 | -6.8 | 1.1e-11 | -0.80 | 0.07 | 0.64 | FALSE |
6 | GTEx | Artery Aorta | NARS2 | 0.26 | 0.29 | lasso | 2 | 0.28 | 1.7e-15 | 6.786 | -6.8 | 9.4e-12 | -0.66 | 1.00 | 0.00 | FALSE |
7 | GTEx | Artery Coronary | NARS2 | 0.19 | 0.20 | lasso | 2 | 0.17 | 2.7e-06 | 6.786 | -6.8 | 9.7e-12 | -0.66 | 0.73 | 0.18 | FALSE |
8 | GTEx | Artery Tibial | GAB2 | 0.06 | 0.00 | lasso | 2 | 0.01 | 2.4e-02 | 7.756 | -7.8 | 7.0e-15 | -0.94 | 0.09 | 0.67 | FALSE |
9 | GTEx | Artery Tibial | NARS2 | 0.18 | 0.20 | lasso | 2 | 0.19 | 5.9e-15 | 6.786 | -6.8 | 9.1e-12 | -0.66 | 1.00 | 0.00 | FALSE |
10 | GTEx | Brain Cerebellar Hemisphere | USP35 | 0.19 | 0.07 | enet | 13 | 0.09 | 2.5e-03 | 8.200 | 7.9 | 2.1e-15 | 0.95 | 0.06 | 0.79 | FALSE |
11 | GTEx | Brain Cerebellar Hemisphere | NARS2 | 0.17 | 0.10 | lasso | 6 | 0.10 | 1.5e-03 | 6.844 | -7.5 | 5.7e-14 | -0.73 | 0.09 | 0.74 | FALSE |
12 | GTEx | Breast Mammary Tissue (Male) | INTS4 | 0.11 | 0.03 | lasso | 3 | 0.01 | 1.6e-01 | -0.015 | -5.4 | 7.3e-08 | -0.48 | 0.04 | 0.10 | FALSE |
13 | GTEx | Esophagus Gastroesophageal Junction | NARS2 | 0.15 | 0.22 | lasso | 5 | 0.20 | 9.6e-08 | 6.855 | -6.9 | 6.4e-12 | -0.65 | 0.98 | 0.01 | FALSE |
14 | GTEx | Esophagus Gastroesophageal Junction | RP11-452H21.1 | 0.19 | 0.19 | lasso | 5 | 0.20 | 7.7e-08 | 6.810 | -6.9 | 6.5e-12 | -0.64 | 0.78 | 0.10 | FALSE |
15 | GTEx | Esophagus Muscularis | GAB2 | 0.05 | 0.04 | lasso | 7 | 0.04 | 1.8e-03 | 6.961 | -7.6 | 3.0e-14 | -0.77 | 0.13 | 0.78 | FALSE |
16 | GTEx | Esophagus Muscularis | NARS2 | 0.25 | 0.19 | lasso | 3 | 0.17 | 8.7e-11 | 6.786 | -6.8 | 8.8e-12 | -0.66 | 1.00 | 0.00 | FALSE |
17 | GTEx | Esophagus Muscularis | RP11-452H21.1 | 0.10 | 0.08 | lasso | 6 | 0.07 | 2.6e-05 | 6.844 | -6.8 | 7.6e-12 | -0.65 | 0.71 | 0.18 | FALSE |
18 | GTEx | Liver | GAB2 | 0.17 | -0.01 | enet | 20 | -0.01 | 5.6e-01 | 7.678 | 6.6 | 4.3e-11 | 0.71 | 0.06 | 0.34 | FALSE |
19 | GTEx | Lung | NARS2 | 0.21 | 0.20 | lasso | 3 | 0.21 | 3.5e-16 | 6.796 | -6.8 | 9.1e-12 | -0.66 | 1.00 | 0.00 | FALSE |
20 | GTEx | Muscle Skeletal | NARS2 | 0.19 | 0.05 | lasso | 2 | 0.04 | 1.1e-04 | 6.786 | -6.7 | 1.6e-11 | -0.65 | 0.29 | 0.03 | FALSE |
21 | GTEx | Nerve Tibial | NARS2 | 0.20 | 0.18 | lasso | 3 | 0.18 | 2.0e-12 | 6.786 | -6.8 | 8.2e-12 | -0.66 | 1.00 | 0.00 | FALSE |
22 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-7I15.3 | 0.07 | 0.01 | lasso | 3 | 0.02 | 3.5e-02 | 7.844 | 6.9 | 5.5e-12 | 0.82 | 0.09 | 0.66 | FALSE |
23 | GTEx | Skin Sun Exposed Lower leg | GAB2 | 0.06 | 0.01 | enet | 26 | 0.03 | 2.2e-03 | 7.801 | -6.0 | 2.4e-09 | -0.67 | 0.12 | 0.82 | FALSE |
24 | GTEx | Stomach | NARS2 | 0.27 | 0.05 | lasso | 8 | 0.06 | 6.1e-04 | 6.882 | -5.3 | 9.2e-08 | -0.52 | 0.21 | 0.04 | FALSE |
25 | GTEx | Testis | USP35 | 0.07 | 0.06 | lasso | 2 | 0.07 | 6.4e-04 | 8.030 | 8.0 | 9.4e-16 | 0.95 | 0.05 | 0.91 | FALSE |
26 | GTEx | Thyroid | NARS2 | 0.30 | 0.30 | lasso | 4 | 0.32 | 1.4e-24 | 6.855 | -6.9 | 6.7e-12 | -0.65 | 1.00 | 0.00 | FALSE |
27 | GTEx | Thyroid | RP11-452H21.1 | 0.13 | 0.06 | lasso | 4 | 0.03 | 3.6e-03 | 6.836 | -6.8 | 1.4e-11 | -0.65 | 0.79 | 0.03 | FALSE |
28 | METSIM | Adipose | USP35 | 0.05 | 0.05 | lasso | 11 | 0.04 | 3.0e-06 | 7.756 | 7.9 | 2.2e-15 | 0.96 | 0.04 | 0.96 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | GAB2 | 0.05 | 0.00 | blup | 435 | 0.02 | 8.0e-04 | 7.346 | -7.2 | 4.2e-13 | -0.75 | 0.23 | 0.68 | FALSE |
30 | ROSMAP | Brain Pre-frontal Cortex | NARS2 | 0.17 | 0.17 | lasso | 2 | 0.17 | 1.8e-21 | 6.786 | -6.8 | 8.2e-12 | -0.66 | 1.00 | 0.00 | FALSE |
31 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NARS2 | 0.12 | 0.05 | lasso | 2 | 0.05 | 2.0e-10 | 6.743 | -6.8 | 1.2e-11 | -0.65 | 0.94 | 0.06 | FALSE |
32 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | NARS2 | 0.09 | 0.04 | blup | 60 | 0.04 | 5.9e-03 | 6.868 | -6.9 | 3.8e-12 | -0.65 | 0.10 | 0.18 | FALSE |
33 | The Cancer Genome Atlas | Glioblastoma Multiforme | GAB2 | 0.10 | 0.07 | blup | 100 | 0.09 | 8.8e-04 | 8.047 | -8.2 | 3.4e-16 | -0.92 | 0.04 | 0.68 | FALSE |
34 | The Cancer Genome Atlas | Glioblastoma Multiforme | NARS2 | 0.19 | 0.14 | lasso | 2 | 0.13 | 9.8e-05 | 6.900 | -6.6 | 4.3e-11 | -0.64 | 0.11 | 0.47 | FALSE |
35 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | NARS2 | 0.14 | 0.06 | lasso | 2 | 0.06 | 2.9e-07 | 6.900 | -6.9 | 5.4e-12 | -0.66 | 0.92 | 0.08 | FALSE |
36 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NARS2 | 0.24 | 0.13 | lasso | 2 | 0.13 | 3.1e-14 | 6.868 | -6.9 | 6.6e-12 | -0.65 | 0.93 | 0.07 | FALSE |
37 | The Cancer Genome Atlas | Lung Adenocarcinoma | NARS2 | 0.17 | 0.09 | enet | 10 | 0.10 | 1.6e-11 | 6.900 | -6.6 | 3.1e-11 | -0.58 | 0.94 | 0.06 | FALSE |
38 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NARS2 | 0.11 | 0.04 | lasso | 3 | 0.04 | 9.9e-06 | 6.810 | -6.8 | 7.7e-12 | -0.65 | 0.80 | 0.09 | FALSE |
39 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | NARS2 | 0.11 | 0.01 | enet | 10 | 0.04 | 1.2e-03 | 6.810 | -6.4 | 1.3e-10 | -0.56 | 0.03 | 0.21 | FALSE |
40 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NARS2 | 0.20 | 0.21 | lasso | 9 | 0.20 | 5.6e-09 | 6.743 | -6.8 | 1.4e-11 | -0.65 | 0.65 | 0.34 | FALSE |
41 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GAB2 | 0.06 | 0.06 | blup | 100 | 0.07 | 7.8e-08 | 7.770 | -8.0 | 9.1e-16 | -0.91 | 0.18 | 0.82 | FALSE |
42 | The Cancer Genome Atlas | Prostate Adenocarcinoma | KCTD21 | 0.03 | 0.00 | blup | 51 | 0.01 | 7.2e-02 | 8.219 | -7.1 | 1.1e-12 | -0.86 | 0.01 | 0.65 | FALSE |
43 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NARS2 | 0.30 | 0.19 | lasso | 2 | 0.17 | 2.6e-17 | 6.855 | -6.9 | 5.4e-12 | -0.65 | 0.93 | 0.07 | FALSE |
44 | The Cancer Genome Atlas | Soft Tissue Sarcoma | NARS2 | 0.11 | 0.05 | enet | 7 | 0.06 | 2.0e-04 | 6.900 | -5.6 | 1.6e-08 | -0.59 | 0.11 | 0.57 | FALSE |
45 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GAB2 | 0.04 | 0.04 | blup | 100 | 0.04 | 1.4e-03 | 8.200 | -8.2 | 2.2e-16 | -0.95 | 0.03 | 0.93 | TRUE |
46 | The Cancer Genome Atlas | Thyroid Carcinoma | KCTD21 | 0.05 | 0.03 | blup | 51 | 0.03 | 1.2e-03 | 1.314 | -6.0 | 2.1e-09 | -0.68 | 0.05 | 0.42 | FALSE |
47 | The Cancer Genome Atlas | Thyroid Carcinoma | NARS2 | 0.27 | 0.27 | lasso | 4 | 0.27 | 1.9e-26 | 6.743 | -6.9 | 7.2e-12 | -0.66 | 0.96 | 0.04 | FALSE |