Best TWAS P=8.55e-12 · Best GWAS P=4.66e-14 conditioned to 3.24e-07
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | ARHGEF40 | 0.08 | 0.04 | enet | 20 | 0.07 | 7.2e-09 | -6.9 | -5.2 | 2.6e-07 | 0.69 | 0.00 | 1.00 | FALSE |
| 2 | GTEx | Artery Aorta | ARHGEF40 | 0.34 | 0.32 | enet | 17 | 0.31 | 1.5e-17 | -6.9 | -6.8 | 8.6e-12 | 0.94 | 0.00 | 1.00 | TRUE |
| 3 | GTEx | Cells Transformed fibroblasts | TOX4 | 0.19 | 0.06 | lasso | 7 | 0.05 | 6.6e-05 | -6.0 | -5.2 | 2.4e-07 | -0.05 | 0.69 | 0.09 | FALSE |
| 4 | GTEx | Testis | TOX4 | 0.31 | 0.00 | enet | 24 | 0.04 | 6.8e-03 | -6.1 | -6.3 | 2.2e-10 | -0.07 | 0.08 | 0.05 | TRUE |
| 5 | YFS | Blood | MRPL52 | 0.44 | 0.22 | enet | 27 | 0.28 | 2.2e-93 | -4.0 | 5.6 | 2.4e-08 | -0.03 | 1.00 | 0.00 | TRUE |
| 6 | The Cancer Genome Atlas | Breast Invasive Carcinoma | METTL3 | 0.03 | 0.04 | lasso | 1 | 0.04 | 3.1e-08 | -5.9 | -5.9 | 3.9e-09 | -0.06 | 0.05 | 0.95 | FALSE |
| 7 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | METTL3 | 0.04 | 0.04 | lasso | 2 | 0.04 | 2.5e-05 | -5.9 | -6.0 | 2.7e-09 | -0.05 | 0.03 | 0.94 | FALSE |
| 8 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | HOMEZ | 0.19 | 0.01 | blup | 41 | 0.05 | 6.0e-03 | 3.0 | 5.3 | 1.0e-07 | 0.01 | 0.01 | 0.36 | FALSE |
| 9 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | METTL3 | 0.17 | 0.03 | lasso | 2 | 0.04 | 1.5e-02 | -5.9 | -5.8 | 5.8e-09 | -0.05 | 0.02 | 0.50 | FALSE |
| 10 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | RAB2B | 0.12 | 0.04 | blup | 52 | 0.07 | 2.1e-03 | -3.3 | -5.2 | 1.6e-07 | -0.08 | 0.01 | 0.38 | TRUE |
| 11 | The Cancer Genome Atlas | Thyroid Carcinoma | HOMEZ | 0.08 | 0.04 | blup | 42 | 0.04 | 7.6e-05 | 3.0 | 5.6 | 2.2e-08 | 0.01 | 0.07 | 0.21 | TRUE |