Best TWAS P=4.28e-31 · Best GWAS P=1.34e-24 conditioned to 0.0362
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Colon Transverse | IL18R1 | 0.14 | 0.00 | enet | 41 | 0.00 | 2.1e-01 | 2.99 | 7.0 | 1.8e-12 | -0.33 | 0.07 | 0.09 | FALSE |
2 | GTEx | Whole Blood | IL18R1 | 0.06 | 0.00 | enet | 14 | 0.01 | 2.1e-02 | -8.83 | 5.2 | 2.1e-07 | -0.51 | 0.14 | 0.23 | FALSE |
3 | ROSMAP | Brain Pre-frontal Cortex | IL1RL2 | 0.08 | 0.02 | enet | 33 | 0.03 | 2.3e-04 | 4.42 | -5.7 | 1.3e-08 | 0.27 | 0.17 | 0.17 | FALSE |
4 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | IL1RL1 | 0.04 | 0.03 | lasso | 7 | 0.03 | 8.1e-04 | -8.84 | -9.5 | 3.2e-21 | 0.67 | 0.15 | 0.46 | FALSE |
5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IL18R1 | 0.05 | 0.01 | blup | 108 | 0.03 | 1.8e-07 | -8.80 | 5.9 | 2.9e-09 | -0.43 | 0.82 | 0.16 | FALSE |
6 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IL1RL1 | 0.02 | 0.01 | blup | 78 | 0.01 | 1.5e-03 | 9.46 | -9.9 | 4.5e-23 | 0.61 | 0.04 | 0.77 | FALSE |
7 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | IL1RL1 | 0.04 | 0.04 | lasso | 8 | 0.04 | 1.7e-05 | -9.75 | -10.7 | 7.3e-27 | 0.78 | 0.01 | 0.98 | FALSE |
8 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL18R1 | 0.06 | 0.01 | blup | 108 | 0.04 | 2.6e-05 | -0.98 | -5.1 | 3.0e-07 | 0.21 | 0.02 | 0.85 | FALSE |
9 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL18RAP | 0.03 | 0.02 | blup | 94 | 0.02 | 1.2e-03 | -8.80 | 9.4 | 8.2e-21 | -0.71 | 0.00 | 0.92 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL1RL1 | 0.08 | 0.08 | enet | 9 | 0.08 | 1.2e-09 | -9.74 | -11.1 | 9.3e-29 | 0.71 | 0.00 | 1.00 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | IL1RL2 | 0.04 | 0.04 | enet | 5 | 0.03 | 1.9e-04 | -7.98 | -8.2 | 2.9e-16 | 0.39 | 0.06 | 0.41 | FALSE |
12 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | IL1RL1 | 0.18 | 0.06 | blup | 78 | 0.15 | 3.7e-09 | 9.46 | -11.5 | 1.4e-30 | 0.64 | 0.01 | 0.99 | FALSE |
13 | The Cancer Genome Atlas | Lung Adenocarcinoma | IL1RL1 | 0.03 | 0.01 | blup | 78 | 0.02 | 4.7e-03 | -9.59 | -11.6 | 4.3e-31 | 0.77 | 0.01 | 0.94 | TRUE |
14 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | IL1RL1 | 0.19 | 0.05 | blup | 78 | 0.10 | 7.1e-05 | 9.54 | -10.8 | 3.9e-27 | 0.68 | 0.05 | 0.86 | FALSE |
15 | The Cancer Genome Atlas | Prostate Adenocarcinoma | IL1R1 | 0.36 | 0.19 | enet | 28 | 0.23 | 1.1e-23 | -6.18 | 5.1 | 2.7e-07 | -0.40 | 0.10 | 0.90 | FALSE |
16 | The Cancer Genome Atlas | Thyroid Carcinoma | IL1RL1 | 0.05 | 0.03 | enet | 6 | 0.03 | 9.7e-04 | -9.74 | -9.9 | 2.7e-23 | 0.66 | 0.01 | 0.99 | FALSE |