Best TWAS P=2.83e-10 · Best GWAS P=1.88e-08 conditioned to 2.11e-05
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Cells Transformed fibroblasts | CHMP1A | 0.27 | 0.06 | enet | 23 | 0.11 | 7.0e-09 | 4.0 | 6.3 | 2.8e-10 | 0.16 | 0.60 | 0.12 | TRUE |
2 | GTEx | Uterus | SNAI3-AS1 | 0.47 | 0.00 | enet | 13 | 0.04 | 5.3e-02 | -2.5 | 5.2 | 2.2e-07 | 0.05 | 0.02 | 0.31 | FALSE |
3 | GTEx | Whole Blood | SNAI3-AS1 | 0.15 | 0.04 | enet | 21 | 0.10 | 6.7e-10 | 2.3 | 6.0 | 1.9e-09 | 0.07 | 0.06 | 0.90 | TRUE |
4 | METSIM | Adipose | CHMP1A | 0.27 | 0.05 | lasso | 9 | 0.07 | 1.3e-10 | 4.0 | 6.0 | 1.7e-09 | 0.13 | 0.73 | 0.17 | FALSE |
5 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DPEP1 | 0.06 | 0.01 | blup | 45 | 0.03 | 1.7e-03 | 4.0 | -6.0 | 1.7e-09 | -0.25 | 0.00 | 0.68 | FALSE |
6 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | ZNF276 | 0.09 | 0.02 | enet | 12 | 0.05 | 2.3e-05 | 5.2 | -5.7 | 1.5e-08 | -0.26 | 0.00 | 0.81 | FALSE |
7 | The Cancer Genome Atlas | Glioblastoma Multiforme | SNAI3 | 0.19 | 0.06 | enet | 7 | 0.12 | 1.6e-04 | 3.6 | -5.1 | 2.9e-07 | 0.03 | 0.00 | 0.09 | FALSE |
8 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DPEP1 | 0.06 | 0.00 | enet | 5 | 0.02 | 2.5e-03 | 5.2 | -5.9 | 3.7e-09 | -0.27 | 0.00 | 0.84 | FALSE |
9 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CHMP1A | 0.07 | 0.02 | blup | 38 | 0.05 | 3.5e-06 | -2.7 | 5.4 | 7.7e-08 | 0.23 | 0.14 | 0.32 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CHMP1A | 0.18 | 0.01 | enet | 11 | 0.06 | 3.8e-04 | 4.0 | 6.1 | 1.1e-09 | 0.14 | 0.01 | 0.70 | FALSE |
11 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CHMP1A | 0.07 | 0.03 | blup | 37 | 0.03 | 1.3e-04 | 4.0 | 5.2 | 1.8e-07 | 0.23 | 0.15 | 0.22 | FALSE |
12 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FANCA | 0.08 | 0.03 | blup | 76 | 0.02 | 2.1e-03 | -4.2 | 5.2 | 1.7e-07 | 0.24 | 0.00 | 0.09 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | CHMP1A | 0.11 | 0.09 | blup | 38 | 0.08 | 5.1e-08 | -2.7 | 5.3 | 1.3e-07 | 0.19 | 0.37 | 0.18 | FALSE |