Best TWAS P=1.55e-13 · Best GWAS P=3.03e-13 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ITPRIPL1 | 0.04 | 0.03 | blup | 167 | 0.03 | 4.8e-05 | 6.6 | 6.2 | 4.3e-10 | 0.83 | 0.03 | 0.97 | FALSE |
2 | GTEx | Adipose Subcutaneous | GPAT2 | 0.04 | 0.03 | enet | 12 | 0.03 | 2.6e-03 | 6.8 | 5.9 | 4.8e-09 | 0.80 | 0.07 | 0.84 | FALSE |
3 | GTEx | Adipose Subcutaneous | FAHD2CP | 0.16 | 0.08 | lasso | 6 | 0.10 | 1.7e-08 | 6.8 | 6.5 | 1.0e-10 | 0.81 | 0.08 | 0.92 | FALSE |
4 | GTEx | Adipose Visceral Omentum | CIAO1 | 0.10 | 0.08 | enet | 16 | 0.08 | 4.8e-05 | -4.4 | 6.1 | 1.2e-09 | 0.64 | 0.44 | 0.43 | FALSE |
5 | GTEx | Adipose Visceral Omentum | ANKRD36C | 0.06 | 0.05 | lasso | 2 | 0.05 | 1.9e-03 | 6.4 | 6.6 | 4.2e-11 | 0.90 | 0.03 | 0.80 | FALSE |
6 | GTEx | Adipose Visceral Omentum | GPAT2 | 0.06 | 0.02 | lasso | 6 | 0.02 | 2.9e-02 | 6.2 | 6.6 | 5.2e-11 | 0.87 | 0.04 | 0.73 | FALSE |
7 | GTEx | Adipose Visceral Omentum | ADRA2B | 0.10 | 0.04 | lasso | 3 | 0.01 | 8.0e-02 | 7.3 | 7.4 | 1.5e-13 | 0.98 | 0.01 | 0.93 | TRUE |
8 | GTEx | Adipose Visceral Omentum | FAHD2CP | 0.09 | 0.07 | lasso | 5 | 0.06 | 4.0e-04 | 6.3 | 6.5 | 6.0e-11 | 0.87 | 0.04 | 0.88 | FALSE |
9 | GTEx | Adipose Visceral Omentum | LINC00342 | 0.12 | 0.01 | enet | 23 | 0.06 | 7.5e-04 | 1.5 | 5.7 | 1.0e-08 | 0.59 | 0.06 | 0.68 | FALSE |
10 | GTEx | Adrenal Gland | CIAO1 | 0.12 | 0.09 | enet | 8 | 0.10 | 1.6e-04 | 6.0 | 6.4 | 2.1e-10 | 0.83 | 0.06 | 0.84 | FALSE |
11 | GTEx | Adrenal Gland | GPAT2 | 0.07 | 0.05 | lasso | 4 | 0.02 | 6.7e-02 | 6.9 | 7.2 | 7.5e-13 | 0.95 | 0.02 | 0.78 | FALSE |
12 | GTEx | Artery Tibial | TMEM127 | 0.04 | 0.02 | lasso | 5 | 0.01 | 3.4e-02 | -2.9 | 5.3 | 9.8e-08 | 0.80 | 0.04 | 0.81 | FALSE |
13 | GTEx | Artery Tibial | CIAO1 | 0.06 | 0.06 | lasso | 4 | 0.04 | 2.8e-04 | -3.9 | 5.4 | 8.1e-08 | 0.64 | 0.18 | 0.78 | FALSE |
14 | GTEx | Artery Tibial | FAHD2CP | 0.07 | 0.06 | lasso | 4 | 0.06 | 3.1e-05 | 6.1 | 5.7 | 1.1e-08 | 0.81 | 0.17 | 0.62 | FALSE |
15 | GTEx | Artery Tibial | LINC00342 | 0.07 | 0.08 | lasso | 5 | 0.08 | 4.8e-07 | 5.5 | 6.1 | 1.4e-09 | 0.74 | 0.25 | 0.74 | FALSE |
16 | GTEx | Brain Cortex | ITPRIPL1 | 0.22 | 0.02 | lasso | 5 | 0.02 | 6.9e-02 | 7.1 | 6.7 | 2.2e-11 | 0.71 | 0.03 | 0.71 | FALSE |
17 | GTEx | Brain Frontal Cortex BA9 | ITPRIPL1 | 0.12 | 0.05 | lasso | 3 | 0.03 | 5.1e-02 | 6.8 | 7.0 | 2.2e-12 | 0.85 | 0.02 | 0.70 | FALSE |
18 | GTEx | Breast Mammary Tissue | ARID5A | 0.06 | 0.00 | lasso | 3 | 0.00 | 2.8e-01 | 5.0 | 5.9 | 3.7e-09 | 0.78 | 0.02 | 0.69 | FALSE |
19 | GTEx | Breast Mammary Tissue | ADRA2B | 0.08 | 0.00 | enet | 11 | 0.01 | 6.6e-02 | 6.1 | 5.8 | 5.1e-09 | 0.85 | 0.02 | 0.85 | FALSE |
20 | GTEx | Cells Transformed fibroblasts | ITPRIPL1 | 0.05 | 0.06 | lasso | 6 | 0.02 | 1.5e-02 | 6.4 | 6.5 | 7.2e-11 | 0.91 | 0.03 | 0.94 | FALSE |
21 | GTEx | Colon Transverse | FAHD2A | 0.15 | 0.15 | lasso | 2 | 0.14 | 3.8e-07 | 4.8 | 5.3 | 1.4e-07 | 0.65 | 0.40 | 0.37 | FALSE |
22 | GTEx | Colon Transverse | ADRA2B | 0.07 | 0.10 | lasso | 1 | 0.06 | 6.3e-04 | 6.0 | 6.0 | 2.2e-09 | 0.80 | 0.08 | 0.67 | FALSE |
23 | GTEx | Colon Transverse | FAHD2CP | 0.05 | 0.01 | lasso | 4 | 0.03 | 1.3e-02 | 7.3 | 6.7 | 2.9e-11 | 0.77 | 0.02 | 0.72 | FALSE |
24 | GTEx | Colon Transverse | LINC00342 | 0.07 | 0.05 | enet | 8 | 0.09 | 5.4e-05 | 6.1 | 6.6 | 3.1e-11 | 0.86 | 0.06 | 0.89 | FALSE |
25 | GTEx | Esophagus Gastroesophageal Junction | GPAT2 | 0.08 | 0.02 | enet | 6 | 0.01 | 1.2e-01 | 6.0 | 6.2 | 4.3e-10 | 0.84 | 0.02 | 0.54 | FALSE |
26 | GTEx | Esophagus Gastroesophageal Junction | ADRA2B | 0.12 | 0.07 | enet | 10 | 0.09 | 4.4e-04 | 6.0 | 7.0 | 2.4e-12 | 0.90 | 0.04 | 0.87 | FALSE |
27 | GTEx | Esophagus Muscularis | CIAO1 | 0.05 | 0.02 | lasso | 4 | 0.04 | 1.8e-03 | -4.1 | 5.2 | 1.8e-07 | 0.60 | 0.07 | 0.52 | FALSE |
28 | GTEx | Esophagus Muscularis | GPAT2 | 0.11 | 0.11 | lasso | 4 | 0.11 | 2.6e-07 | 6.0 | 5.7 | 1.5e-08 | 0.81 | 0.30 | 0.69 | FALSE |
29 | GTEx | Esophagus Muscularis | ADRA2B | 0.09 | 0.05 | enet | 17 | 0.06 | 9.0e-05 | 6.8 | 5.9 | 3.6e-09 | 0.70 | 0.07 | 0.88 | FALSE |
30 | GTEx | Heart Atrial Appendage | TMEM127 | 0.10 | 0.02 | lasso | 4 | 0.02 | 4.6e-02 | 5.3 | 5.3 | 9.6e-08 | 0.70 | 0.07 | 0.46 | FALSE |
31 | GTEx | Heart Atrial Appendage | LINC00342 | 0.05 | 0.00 | enet | 8 | 0.01 | 1.2e-01 | 6.2 | 6.3 | 3.0e-10 | 0.80 | 0.03 | 0.69 | FALSE |
32 | GTEx | Heart Left Ventricle | LMAN2L | 0.07 | 0.00 | enet | 12 | 0.01 | 1.1e-01 | 3.2 | 5.2 | 2.6e-07 | 0.62 | 0.05 | 0.65 | FALSE |
33 | GTEx | Heart Left Ventricle | ANKRD36C | 0.05 | 0.04 | lasso | 4 | 0.03 | 1.4e-02 | 5.5 | 6.2 | 7.0e-10 | 0.82 | 0.04 | 0.90 | FALSE |
34 | GTEx | Heart Left Ventricle | GPAT2 | 0.08 | 0.12 | enet | 7 | 0.10 | 7.3e-06 | 6.4 | 6.6 | 5.6e-11 | 0.86 | 0.11 | 0.88 | FALSE |
35 | GTEx | Heart Left Ventricle | ADRA2B | 0.08 | 0.05 | lasso | 4 | 0.05 | 7.6e-04 | 6.0 | 6.4 | 1.9e-10 | 0.83 | 0.10 | 0.77 | FALSE |
36 | GTEx | Heart Left Ventricle | FAHD2CP | 0.10 | 0.02 | lasso | 4 | 0.03 | 7.6e-03 | 5.3 | 6.0 | 2.0e-09 | 0.79 | 0.08 | 0.61 | FALSE |
37 | GTEx | Liver | FAHD2CP | 0.18 | 0.14 | lasso | 4 | 0.14 | 9.3e-05 | 6.4 | 6.1 | 7.8e-10 | 0.88 | 0.06 | 0.76 | FALSE |
38 | GTEx | Liver | LINC00342 | 0.12 | 0.03 | enet | 13 | 0.06 | 8.5e-03 | 7.2 | 6.5 | 6.0e-11 | 0.89 | 0.02 | 0.77 | FALSE |
39 | GTEx | Lung | TMEM127 | 0.06 | 0.03 | enet | 16 | 0.04 | 4.1e-04 | 7.0 | 6.3 | 2.7e-10 | 0.84 | 0.02 | 0.98 | FALSE |
40 | GTEx | Lung | CIAO1 | 0.11 | 0.12 | lasso | 2 | 0.16 | 1.6e-12 | -3.9 | 5.9 | 4.7e-09 | 0.74 | 0.18 | 0.82 | FALSE |
41 | GTEx | Lung | GPAT2 | 0.04 | 0.03 | lasso | 2 | 0.02 | 5.8e-03 | 6.8 | 6.6 | 4.4e-11 | 0.87 | 0.03 | 0.86 | FALSE |
42 | GTEx | Lung | ITPRIPL1 | 0.11 | 0.06 | lasso | 7 | 0.13 | 7.3e-10 | -3.5 | 5.3 | 1.1e-07 | 0.82 | 0.03 | 0.97 | FALSE |
43 | GTEx | Lung | FAHD2CP | 0.09 | 0.10 | lasso | 5 | 0.10 | 4.3e-08 | 6.0 | 7.0 | 2.6e-12 | 0.88 | 0.06 | 0.94 | FALSE |
44 | GTEx | Muscle Skeletal | GPAT2 | 0.13 | 0.14 | enet | 11 | 0.16 | 1.1e-15 | 6.7 | 6.7 | 1.8e-11 | 0.88 | 0.12 | 0.88 | FALSE |
45 | GTEx | Muscle Skeletal | ADRA2B | 0.04 | 0.00 | lasso | 7 | 0.00 | 6.3e-01 | 7.3 | 5.9 | 3.3e-09 | 0.90 | 0.02 | 0.53 | FALSE |
46 | GTEx | Muscle Skeletal | FAHD2CP | 0.07 | 0.08 | lasso | 5 | 0.08 | 2.5e-08 | 6.8 | 6.7 | 1.5e-11 | 0.87 | 0.09 | 0.91 | FALSE |
47 | GTEx | Nerve Tibial | TMEM127 | 0.05 | 0.02 | lasso | 4 | 0.02 | 2.7e-02 | 6.9 | 6.8 | 1.4e-11 | 0.88 | 0.04 | 0.93 | FALSE |
48 | GTEx | Nerve Tibial | CIAO1 | 0.11 | 0.05 | enet | 12 | 0.10 | 2.2e-07 | -4.4 | 5.8 | 7.1e-09 | 0.74 | 0.06 | 0.94 | FALSE |
49 | GTEx | Nerve Tibial | GPAT2 | 0.09 | 0.08 | lasso | 3 | 0.07 | 9.1e-06 | 6.0 | 5.9 | 4.4e-09 | 0.80 | 0.32 | 0.56 | FALSE |
50 | GTEx | Nerve Tibial | ITPRIPL1 | 0.10 | 0.03 | lasso | 4 | 0.03 | 1.7e-03 | 6.3 | 6.2 | 6.2e-10 | 0.86 | 0.03 | 0.91 | FALSE |
51 | GTEx | Nerve Tibial | ADRA2B | 0.11 | 0.11 | enet | 6 | 0.11 | 5.0e-08 | 6.0 | 5.7 | 1.2e-08 | 0.82 | 0.29 | 0.71 | FALSE |
52 | GTEx | Nerve Tibial | LINC00342 | 0.06 | 0.05 | lasso | 4 | 0.04 | 7.0e-04 | 7.0 | 7.1 | 1.1e-12 | 0.94 | 0.01 | 0.98 | FALSE |
53 | GTEx | Ovary | FAHD2CP | 0.32 | 0.05 | lasso | 4 | 0.06 | 1.7e-02 | 6.2 | 6.9 | 4.2e-12 | 0.72 | 0.03 | 0.21 | FALSE |
54 | GTEx | Pancreas | ANKRD36C | 0.05 | 0.05 | lasso | 4 | 0.03 | 1.5e-02 | 6.9 | 6.8 | 1.1e-11 | 0.88 | 0.04 | 0.59 | FALSE |
55 | GTEx | Pancreas | ITPRIPL1 | 0.12 | 0.01 | enet | 21 | 0.06 | 1.7e-03 | -2.8 | 5.2 | 1.6e-07 | 0.70 | 0.08 | 0.72 | FALSE |
56 | GTEx | Pancreas | FAHD2CP | 0.10 | 0.15 | lasso | 3 | 0.13 | 5.2e-06 | 6.8 | 6.8 | 1.1e-11 | 0.87 | 0.09 | 0.90 | FALSE |
57 | GTEx | Skin Sun Exposed Lower leg | TMEM127 | 0.03 | 0.04 | lasso | 3 | 0.03 | 1.3e-03 | 7.0 | 6.5 | 1.0e-10 | 0.92 | 0.02 | 0.96 | FALSE |
58 | GTEx | Skin Sun Exposed Lower leg | GPAT2 | 0.04 | 0.03 | enet | 16 | 0.04 | 3.4e-04 | 6.4 | 6.5 | 8.1e-11 | 0.80 | 0.08 | 0.80 | FALSE |
59 | GTEx | Skin Sun Exposed Lower leg | LINC00342 | 0.05 | 0.05 | enet | 9 | 0.04 | 5.9e-04 | 6.2 | 5.9 | 3.6e-09 | 0.74 | 0.15 | 0.64 | FALSE |
60 | GTEx | Small Intestine Terminal Ileum | TMEM127 | 0.27 | 0.23 | lasso | 5 | 0.22 | 1.0e-05 | 7.3 | 7.2 | 5.5e-13 | 0.96 | 0.01 | 0.96 | FALSE |
61 | GTEx | Spleen | CIAO1 | 0.22 | -0.01 | enet | 20 | 0.14 | 2.3e-04 | -4.3 | 5.4 | 5.6e-08 | 0.72 | 0.05 | 0.63 | FALSE |
62 | GTEx | Spleen | FAHD2CP | 0.18 | 0.18 | lasso | 7 | 0.16 | 6.4e-05 | 6.7 | 6.9 | 7.4e-12 | 0.88 | 0.05 | 0.86 | FALSE |
63 | GTEx | Stomach | GPAT2 | 0.17 | 0.16 | lasso | 2 | 0.12 | 2.0e-06 | 6.0 | 5.8 | 5.0e-09 | 0.80 | 0.12 | 0.87 | FALSE |
64 | GTEx | Stomach | FAHD2CP | 0.10 | 0.06 | enet | 14 | 0.08 | 7.9e-05 | 6.3 | 5.7 | 1.2e-08 | 0.76 | 0.08 | 0.83 | FALSE |
65 | GTEx | Testis | CIAO1 | 0.34 | 0.24 | lasso | 9 | 0.35 | 1.6e-16 | -3.9 | 6.0 | 1.6e-09 | 0.79 | 0.04 | 0.96 | FALSE |
66 | GTEx | Testis | FAHD2CP | 0.14 | 0.23 | lasso | 7 | 0.24 | 6.8e-11 | 6.0 | 6.7 | 2.4e-11 | 0.88 | 0.08 | 0.92 | FALSE |
67 | GTEx | Thyroid | ANKRD36C | 0.07 | 0.01 | lasso | 5 | 0.00 | 1.4e-01 | 2.0 | 5.2 | 2.5e-07 | 0.56 | 0.02 | 0.25 | FALSE |
68 | GTEx | Thyroid | GPAT2 | 0.03 | 0.02 | lasso | 3 | 0.01 | 5.9e-02 | 6.3 | 6.3 | 2.5e-10 | 0.84 | 0.06 | 0.58 | FALSE |
69 | GTEx | Thyroid | ADRA2B | 0.07 | 0.11 | enet | 13 | 0.10 | 2.4e-08 | 6.7 | 7.0 | 2.1e-12 | 0.89 | 0.07 | 0.93 | FALSE |
70 | GTEx | Thyroid | LINC00342 | 0.09 | 0.09 | lasso | 5 | 0.08 | 1.3e-06 | 6.2 | 6.4 | 1.8e-10 | 0.76 | 0.25 | 0.74 | FALSE |
71 | GTEx | Whole Blood | FAHD2CP | 0.03 | 0.01 | lasso | 4 | 0.01 | 3.1e-02 | 6.7 | 6.7 | 2.2e-11 | 0.84 | 0.06 | 0.67 | FALSE |
72 | METSIM | Adipose | GPAT2 | 0.01 | 0.01 | blup | 119 | 0.01 | 4.4e-02 | 7.0 | 6.8 | 9.4e-12 | 0.93 | 0.03 | 0.89 | FALSE |
73 | ROSMAP | Brain Pre-frontal Cortex | ITPRIPL1 | 0.05 | 0.03 | lasso | 10 | 0.04 | 4.0e-06 | 5.2 | 5.8 | 5.7e-09 | 0.82 | 0.12 | 0.88 | FALSE |
74 | YFS | Blood | ARID5A | 0.06 | 0.04 | lasso | 8 | 0.05 | 3.9e-17 | 5.3 | 6.0 | 2.7e-09 | 0.65 | 1.00 | 0.00 | FALSE |
75 | YFS | Blood | TMEM127 | 0.03 | 0.04 | enet | 6 | 0.04 | 1.5e-13 | 6.0 | 6.8 | 9.4e-12 | 0.92 | 0.04 | 0.96 | FALSE |
76 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CIAO1 | 0.04 | 0.01 | blup | 18 | 0.03 | 1.0e-03 | 7.0 | 6.2 | 4.6e-10 | 0.77 | 0.01 | 0.81 | FALSE |
77 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NCAPH | 0.01 | 0.00 | blup | 28 | 0.01 | 1.4e-02 | -4.4 | -5.8 | 5.7e-09 | -0.71 | 0.03 | 0.48 | FALSE |
78 | The Cancer Genome Atlas | Breast Invasive Carcinoma | STARD7 | 0.02 | 0.00 | enet | 7 | 0.01 | 1.4e-03 | 7.0 | -6.0 | 2.1e-09 | -0.70 | 0.00 | 0.60 | FALSE |
79 | The Cancer Genome Atlas | Colon Adenocarcinoma | ADRA2B | 0.07 | 0.01 | blup | 23 | 0.05 | 9.9e-04 | 6.9 | 6.4 | 1.2e-10 | 0.88 | 0.02 | 0.90 | FALSE |
80 | The Cancer Genome Atlas | Colon Adenocarcinoma | CIAO1 | 0.04 | 0.02 | blup | 18 | 0.04 | 1.9e-03 | -3.9 | 5.9 | 2.8e-09 | 0.69 | 0.01 | 0.60 | FALSE |
81 | The Cancer Genome Atlas | Colon Adenocarcinoma | LOC285033 | 0.32 | 0.07 | enet | 7 | 0.12 | 3.5e-07 | 7.0 | 5.8 | 6.2e-09 | 0.73 | 0.00 | 0.95 | FALSE |
82 | The Cancer Genome Atlas | Colon Adenocarcinoma | TMEM127 | 0.06 | 0.05 | blup | 19 | 0.07 | 1.2e-04 | -3.9 | 5.5 | 3.3e-08 | 0.61 | 0.03 | 0.77 | FALSE |
83 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | GPAT2 | 0.02 | 0.02 | lasso | 2 | 0.01 | 1.0e-02 | 6.1 | 5.9 | 2.9e-09 | 0.77 | 0.01 | 0.57 | FALSE |
84 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NEURL3 | 0.03 | 0.02 | lasso | 3 | 0.02 | 6.9e-03 | 5.3 | 5.6 | 2.3e-08 | 0.71 | 0.00 | 0.80 | FALSE |
85 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ADRA2B | 0.05 | 0.06 | blup | 22 | 0.09 | 2.2e-10 | 6.4 | 6.0 | 1.5e-09 | 0.87 | 0.02 | 0.98 | FALSE |
86 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GPAT2 | 0.03 | 0.03 | blup | 12 | 0.03 | 8.0e-05 | 6.9 | 6.7 | 2.1e-11 | 0.85 | 0.00 | 0.99 | FALSE |
87 | The Cancer Genome Atlas | Brain Lower Grade Glioma | TMEM127 | 0.05 | 0.01 | blup | 21 | 0.02 | 2.9e-03 | 6.6 | 6.3 | 2.7e-10 | 0.83 | 0.00 | 0.69 | FALSE |
88 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | ADRA2B | 0.05 | 0.01 | blup | 22 | 0.02 | 6.3e-02 | -2.9 | 6.2 | 6.9e-10 | 0.88 | 0.01 | 0.51 | FALSE |
89 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GPAT2 | 0.03 | 0.04 | lasso | 2 | 0.03 | 2.0e-04 | 5.5 | 5.3 | 1.0e-07 | 0.71 | 0.02 | 0.52 | FALSE |
90 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TMEM127 | 0.06 | 0.05 | lasso | 1 | 0.05 | 3.8e-06 | 6.6 | 6.6 | 4.7e-11 | 0.93 | 0.00 | 0.99 | FALSE |
91 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ADRA2B | 0.03 | 0.02 | blup | 22 | 0.02 | 6.8e-03 | 6.2 | 6.1 | 1.0e-09 | 0.86 | 0.01 | 0.65 | FALSE |
92 | The Cancer Genome Atlas | Stomach Adenocarcinoma | LOC729234 | 0.05 | 0.06 | blup | 11 | 0.06 | 2.0e-05 | 6.0 | 6.3 | 3.5e-10 | 0.82 | 0.00 | 0.98 | FALSE |
93 | The Cancer Genome Atlas | Thyroid Carcinoma | GPAT2 | 0.02 | 0.04 | lasso | 1 | 0.03 | 4.0e-04 | 6.4 | 6.4 | 1.9e-10 | 0.84 | 0.01 | 0.83 | FALSE |
94 | The Cancer Genome Atlas | Thyroid Carcinoma | TMEM127 | 0.05 | 0.02 | blup | 20 | 0.01 | 1.8e-02 | 7.0 | 6.0 | 2.1e-09 | 0.89 | 0.00 | 0.85 | FALSE |