Best TWAS P=1.68e-11 · Best GWAS P=9.29e-11 conditioned to 0.0363
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ELOVL1 | 0.04 | 0.01 | enet | 11 | 0.01 | 6.3e-03 | 5.0 | -5.6 | 2.3e-08 | -0.77 | 0.12 | 0.84 | FALSE |
2 | GTEx | Adipose Visceral Omentum | TIE1 | 0.13 | 0.09 | lasso | 4 | 0.06 | 7.5e-04 | 5.4 | -5.2 | 1.9e-07 | -0.82 | 0.10 | 0.83 | FALSE |
3 | GTEx | Adrenal Gland | HYI | 0.15 | 0.18 | lasso | 1 | 0.14 | 8.0e-06 | 5.4 | -5.5 | 5.1e-08 | -0.82 | 0.14 | 0.80 | FALSE |
4 | GTEx | Breast Mammary Tissue | TIE1 | 0.08 | 0.06 | lasso | 5 | 0.08 | 7.1e-05 | 5.0 | -5.5 | 3.6e-08 | -0.87 | 0.05 | 0.93 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | RP1-92O14.6 | 0.12 | 0.02 | lasso | 5 | 0.03 | 3.6e-03 | 5.5 | -5.2 | 1.8e-07 | -0.78 | 0.08 | 0.91 | FALSE |
6 | GTEx | Esophagus Mucosa | HYI | 0.08 | 0.05 | enet | 18 | 0.06 | 4.9e-05 | 5.4 | -6.7 | 1.7e-11 | -0.76 | 0.05 | 0.94 | TRUE |
7 | GTEx | Esophagus Mucosa | RP1-92O14.6 | 0.12 | 0.11 | lasso | 3 | 0.09 | 8.3e-07 | 5.7 | -5.7 | 1.0e-08 | -0.83 | 0.09 | 0.91 | FALSE |
8 | GTEx | Heart Left Ventricle | TIE1 | 0.22 | 0.04 | lasso | 11 | 0.04 | 5.3e-03 | 5.0 | -5.7 | 1.6e-08 | -0.86 | 0.06 | 0.93 | FALSE |
9 | GTEx | Heart Left Ventricle | MED8 | 0.08 | 0.01 | lasso | 3 | 0.01 | 1.2e-01 | 3.7 | -5.8 | 5.5e-09 | -0.81 | 0.04 | 0.81 | FALSE |
10 | GTEx | Lung | HYI | 0.18 | 0.04 | enet | 22 | 0.06 | 1.8e-05 | 6.5 | -6.4 | 1.5e-10 | -0.78 | 0.01 | 0.99 | FALSE |
11 | GTEx | Muscle Skeletal | TIE1 | 0.08 | 0.06 | lasso | 6 | 0.05 | 5.5e-06 | 5.5 | -5.6 | 2.0e-08 | -0.86 | 0.06 | 0.94 | FALSE |
12 | GTEx | Muscle Skeletal | MED8 | 0.23 | 0.37 | lasso | 1 | 0.37 | 7.7e-38 | 5.7 | -5.7 | 1.2e-08 | -0.83 | 0.33 | 0.67 | FALSE |
13 | GTEx | Muscle Skeletal | RP1-92O14.6 | 0.18 | 0.24 | lasso | 3 | 0.24 | 6.8e-23 | 5.7 | -5.9 | 4.3e-09 | -0.86 | 0.34 | 0.66 | FALSE |
14 | GTEx | Nerve Tibial | TIE1 | 0.20 | 0.09 | lasso | 6 | 0.13 | 2.6e-09 | 5.0 | -5.3 | 1.1e-07 | -0.79 | 0.05 | 0.95 | FALSE |
15 | GTEx | Nerve Tibial | MED8 | 0.13 | 0.07 | enet | 11 | 0.16 | 3.6e-11 | 6.1 | 5.9 | 3.8e-09 | 0.82 | 0.04 | 0.96 | FALSE |
16 | GTEx | Skin Not Sun Exposed Suprapubic | RP1-92O14.6 | 0.25 | 0.09 | lasso | 12 | 0.11 | 1.9e-06 | 6.1 | -6.6 | 3.5e-11 | -0.87 | 0.03 | 0.97 | FALSE |
17 | GTEx | Skin Sun Exposed Lower leg | RP1-92O14.6 | 0.13 | 0.07 | lasso | 5 | 0.07 | 1.6e-06 | 5.4 | -6.0 | 1.5e-09 | -0.92 | 0.04 | 0.96 | FALSE |
18 | GTEx | Testis | MED8 | 0.21 | 0.14 | lasso | 3 | 0.20 | 1.8e-09 | -3.6 | -5.2 | 2.4e-07 | -0.85 | 0.07 | 0.93 | FALSE |
19 | GTEx | Testis | SZT2 | 0.14 | 0.12 | lasso | 3 | 0.09 | 5.7e-05 | 6.5 | 6.5 | 9.3e-11 | 0.99 | 0.02 | 0.98 | FALSE |
20 | GTEx | Thyroid | TIE1 | 0.10 | 0.05 | lasso | 3 | 0.05 | 1.3e-04 | 5.4 | -5.6 | 2.7e-08 | -0.86 | 0.03 | 0.96 | FALSE |
21 | GTEx | Thyroid | MED8 | 0.08 | 0.07 | lasso | 3 | 0.06 | 2.0e-05 | 5.7 | 5.7 | 1.6e-08 | 0.83 | 0.26 | 0.73 | FALSE |
22 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | C1orf84 | 0.02 | 0.02 | blup | 44 | 0.01 | 2.0e-02 | 6.4 | -6.0 | 2.3e-09 | -0.93 | 0.02 | 0.70 | FALSE |
23 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | HYI | 0.09 | 0.02 | blup | 33 | 0.02 | 8.6e-03 | -3.2 | -5.1 | 3.1e-07 | -0.80 | 0.01 | 0.48 | FALSE |
24 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | MED8 | 0.03 | 0.00 | blup | 38 | 0.01 | 2.1e-02 | 6.0 | -5.5 | 3.2e-08 | -0.89 | 0.01 | 0.51 | FALSE |
25 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C1orf84 | 0.02 | 0.03 | blup | 46 | 0.03 | 3.4e-07 | 6.1 | -6.0 | 1.6e-09 | -0.92 | 0.03 | 0.97 | FALSE |
26 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | HYI | 0.02 | 0.01 | blup | 34 | 0.02 | 6.1e-03 | 6.1 | -6.1 | 9.0e-10 | -0.96 | 0.02 | 0.78 | FALSE |
27 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MED8 | 0.02 | 0.03 | enet | 5 | 0.02 | 9.0e-04 | 6.5 | -6.3 | 2.1e-10 | -0.97 | 0.01 | 0.97 | FALSE |
28 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | KIAA0467 | 0.03 | 0.00 | blup | 54 | 0.02 | 2.7e-03 | 4.7 | 5.7 | 1.1e-08 | 0.82 | 0.03 | 0.45 | FALSE |
29 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ELOVL1 | 0.06 | 0.04 | blup | 36 | 0.03 | 4.7e-03 | 5.7 | -5.8 | 6.4e-09 | -0.87 | 0.02 | 0.91 | FALSE |
30 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C1orf84 | 0.01 | 0.02 | blup | 45 | 0.02 | 3.0e-03 | 6.1 | -6.2 | 5.5e-10 | -0.94 | 0.02 | 0.80 | FALSE |
31 | The Cancer Genome Atlas | Lung Adenocarcinoma | C1orf84 | 0.02 | 0.02 | blup | 45 | 0.02 | 1.3e-03 | 5.7 | -6.3 | 2.5e-10 | -0.94 | 0.03 | 0.88 | FALSE |
32 | The Cancer Genome Atlas | Lung Adenocarcinoma | CDC20 | 0.03 | 0.03 | blup | 34 | 0.03 | 8.8e-05 | 5.5 | -5.4 | 7.3e-08 | -0.75 | 0.09 | 0.75 | FALSE |
33 | The Cancer Genome Atlas | Lung Adenocarcinoma | MED8 | 0.02 | 0.02 | blup | 39 | 0.01 | 7.5e-03 | 5.4 | -5.8 | 5.1e-09 | -0.83 | 0.02 | 0.49 | FALSE |
34 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | MED8 | 0.03 | 0.01 | lasso | 4 | 0.02 | 6.2e-03 | -3.6 | -5.5 | 3.5e-08 | -0.90 | 0.01 | 0.77 | FALSE |
35 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C1orf210 | 0.03 | 0.01 | enet | 9 | 0.01 | 2.6e-02 | 4.9 | -5.4 | 6.2e-08 | -0.55 | 0.01 | 0.75 | FALSE |
36 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C1orf84 | 0.02 | 0.02 | lasso | 2 | 0.02 | 8.8e-03 | 5.5 | -5.5 | 3.2e-08 | -0.83 | 0.03 | 0.50 | FALSE |
37 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | KIAA0467 | 0.17 | 0.08 | blup | 52 | 0.13 | 2.9e-04 | 5.5 | 6.3 | 3.7e-10 | 0.93 | 0.03 | 0.87 | FALSE |
38 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | MED8 | 0.26 | 0.18 | blup | 39 | 0.24 | 3.5e-09 | 6.1 | -5.3 | 8.6e-08 | -0.91 | 0.02 | 0.98 | FALSE |
39 | The Cancer Genome Atlas | Thyroid Carcinoma | C1orf84 | 0.03 | 0.02 | blup | 46 | 0.03 | 7.0e-04 | 6.1 | -5.9 | 4.2e-09 | -0.93 | 0.03 | 0.89 | FALSE |