[Hub]/) : Traits : Standing height : ← →

chr2:85,073,697-86,518,249

Best TWAS P=9.66e-14 · Best GWAS P=6.6e-15 conditioned to 7.82e-05

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	RNF181	0.07	0.02	bslmm	476	0.03	3.4e-04	6.8	6.1	8.9e-10	0.59	0.02	0.92	FALSE
2	GTEx	Adipose Subcutaneous	GGCX	0.16	0.09	lasso	5	0.08	3.1e-07	6.3	6.2	5.7e-10	0.71	0.97	0.02	FALSE
3	GTEx	Adipose Visceral Omentum	GGCX	0.13	0.03	lasso	7	0.03	1.1e-02	6.3	5.8	9.1e-09	0.68	0.32	0.27	FALSE
4	GTEx	Artery Aorta	GGCX	0.23	0.22	lasso	6	0.23	5.5e-13	6.3	7.0	1.9e-12	0.74	0.95	0.05	FALSE
5	GTEx	Artery Tibial	GGCX	0.29	0.22	enet	14	0.24	6.3e-19	6.2	6.9	5.8e-12	0.69	0.99	0.01	FALSE
6	GTEx	Brain Cerebellar Hemisphere	GGCX	0.46	0.41	enet	16	0.48	5.3e-14	4.7	6.2	4.7e-10	0.72	0.96	0.03	FALSE
7	GTEx	Brain Cerebellum	GGCX	0.54	0.30	lasso	10	0.34	6.0e-11	6.3	6.5	6.2e-11	0.75	0.94	0.05	FALSE
8	GTEx	Brain Cortex	GGCX	0.38	0.17	enet	30	0.02	1.1e-01	4.7	6.2	6.9e-10	0.60	0.47	0.18	FALSE
9	GTEx	Brain Nucleus accumbens basal ganglia	GGCX	0.28	0.09	enet	7	0.02	7.6e-02	4.7	5.8	6.2e-09	0.67	0.10	0.25	FALSE
10	GTEx	Breast Mammary Tissue	GGCX	0.14	0.01	lasso	3	0.01	1.0e-01	6.3	6.2	5.8e-10	0.69	0.13	0.12	FALSE
11	GTEx	Breast Mammary Tissue (Male)	GGCX	0.10	0.00	enet	4	0.00	3.3e-01	4.4	5.7	9.5e-09	0.69	0.06	0.09	FALSE
12	GTEx	Cells EBV-transformed lymphocytes	GGCX	0.36	0.31	enet	18	0.29	4.5e-10	4.4	6.0	1.8e-09	0.71	0.98	0.02	FALSE
13	GTEx	Colon Transverse	GGCX	0.26	0.28	lasso	3	0.28	1.4e-13	6.3	6.7	2.8e-11	0.73	0.97	0.03	FALSE
14	GTEx	Esophagus Gastroesophageal Junction	GGCX	0.24	0.16	lasso	6	0.12	4.3e-05	6.4	6.9	4.5e-12	0.74	0.38	0.38	FALSE
15	GTEx	Esophagus Mucosa	GGCX	0.29	0.21	enet	30	0.27	5.8e-18	6.4	6.5	8.5e-11	0.62	0.98	0.02	FALSE
16	GTEx	Esophagus Mucosa	VAMP8	0.41	0.31	lasso	6	0.36	6.6e-25	6.4	-5.2	1.7e-07	-0.66	0.97	0.03	FALSE
17	GTEx	Esophagus Mucosa	TMEM150A	0.10	0.05	enet	5	0.05	3.2e-04	6.3	-6.5	7.9e-11	-0.80	0.06	0.88	FALSE
18	GTEx	Esophagus Muscularis	GGCX	0.14	0.12	lasso	9	0.12	1.1e-07	6.3	6.5	7.9e-11	0.75	0.65	0.35	FALSE
19	GTEx	Lung	GGCX	0.17	0.17	lasso	2	0.18	2.3e-13	6.4	6.4	1.7e-10	0.72	0.98	0.02	FALSE
20	GTEx	Muscle Skeletal	GGCX	0.10	0.04	enet	11	0.02	2.7e-03	6.3	6.9	4.3e-12	0.78	0.09	0.90	FALSE
21	GTEx	Nerve Tibial	GGCX	0.38	0.30	lasso	7	0.33	6.5e-24	6.2	6.7	1.7e-11	0.72	0.99	0.01	FALSE
22	GTEx	Pancreas	VAMP5	0.29	0.09	enet	4	0.05	3.2e-03	5.5	-5.9	4.2e-09	-0.66	0.02	0.76	FALSE
23	GTEx	Skin Not Sun Exposed Suprapubic	GGCX	0.13	0.04	enet	11	0.06	3.9e-04	6.3	7.5	9.7e-14	0.64	0.33	0.15	TRUE
24	GTEx	Skin Sun Exposed Lower leg	GGCX	0.15	0.11	lasso	3	0.18	7.9e-15	6.3	6.8	1.2e-11	0.69	0.98	0.02	FALSE
25	GTEx	Testis	GGCX	0.38	0.36	enet	25	0.40	8.6e-19	6.4	7.1	1.1e-12	0.72	0.82	0.18	FALSE
26	GTEx	Thyroid	GGCX	0.30	0.17	enet	10	0.23	1.4e-17	6.3	7.1	1.1e-12	0.74	0.97	0.03	FALSE
27	GTEx	Whole Blood	GGCX	0.15	0.14	lasso	4	0.15	1.7e-13	6.3	6.7	2.7e-11	0.73	0.98	0.02	FALSE
28	METSIM	Adipose	GGCX	0.07	0.09	lasso	8	0.09	9.6e-14	4.4	5.3	9.1e-08	0.70	0.98	0.02	FALSE
29	METSIM	Adipose	VAMP5	0.05	0.03	lasso	8	0.01	2.9e-03	4.4	-5.3	1.1e-07	-0.71	0.29	0.70	FALSE
30	NTR	Blood	VAMP8	0.05	0.04	lasso	8	0.04	2.0e-12	5.8	-6.0	2.5e-09	-0.74	0.98	0.02	FALSE
31	YFS	Blood	VAMP8	0.15	0.15	enet	37	0.18	2.2e-55	6.4	-6.1	1.0e-09	-0.75	0.98	0.02	FALSE
32	The Cancer Genome Atlas	Bladder Urothelial Carcinoma	USP39	0.04	0.00	blup	68	0.01	1.8e-02	4.6	-5.9	3.2e-09	-0.78	0.01	0.78	FALSE
33	The Cancer Genome Atlas	Breast Invasive Carcinoma	USP39	0.02	0.00	blup	67	0.01	1.7e-03	7.8	-5.7	9.2e-09	-0.78	0.01	0.92	FALSE
34	The Cancer Genome Atlas	Colon Adenocarcinoma	C2orf68	0.06	0.06	lasso	2	0.05	1.1e-03	6.8	-6.7	1.6e-11	-0.88	0.02	0.68	FALSE
35	The Cancer Genome Atlas	Brain Lower Grade Glioma	GGCX	0.05	0.05	lasso	1	0.04	1.2e-05	6.4	6.4	1.5e-10	0.72	0.76	0.08	FALSE
36	The Cancer Genome Atlas	Lung Adenocarcinoma	USP39	0.04	0.02	blup	67	0.03	2.0e-04	6.4	-6.3	3.2e-10	-0.76	0.07	0.83	FALSE
37	The Cancer Genome Atlas	Ovarian Serous Cystadenocarcinoma	VAMP8	0.06	0.01	enet	15	0.02	2.1e-02	5.5	5.4	7.5e-08	0.45	0.05	0.09	FALSE
38	The Cancer Genome Atlas	Prostate Adenocarcinoma	GGCX	0.04	0.02	blup	44	0.02	2.7e-03	5.4	7.0	1.8e-12	0.72	0.17	0.53	FALSE
39	The Cancer Genome Atlas	Soft Tissue Sarcoma	GGCX	0.04	0.03	lasso	2	0.03	1.1e-02	6.4	6.4	1.8e-10	0.70	0.06	0.06	FALSE
40	The Cancer Genome Atlas	Thyroid Carcinoma	GGCX	0.03	0.03	enet	5	0.02	8.7e-03	5.9	6.4	1.4e-10	0.82	0.05	0.56	FALSE
41	The Cancer Genome Atlas	Thyroid Carcinoma	VAMP8	0.04	0.05	lasso	3	0.05	1.2e-05	6.2	-6.4	1.5e-10	-0.77	0.36	0.48	FALSE